Variant report

Variant	rs1075229
Chromosome Location	chr7:104520254-104520255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11561931	0.90[ASN][1000 genomes]
rs12665943	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17706864	0.83[ASN][1000 genomes]
rs2041830	0.90[ASN][1000 genomes]
rs34477839	0.90[ASN][1000 genomes]
rs35514223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815553	0.90[ASN][1000 genomes]
rs62485455	0.90[ASN][1000 genomes]
rs7458894	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104509800-104524400	Weak transcription	Pancreas	Pancrea
2	chr7:104512000-104524000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:104519600-104520800	Strong transcription	Fetal Intestine Large	intestine
4	chr7:104519800-104524000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr7:104520000-104520400	Weak transcription	Fetal Intestine Small	intestine
6	chr7:104520200-104520800	ZNF genes & repeats	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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