Variant report

Variant	rs1075408
Chromosome Location	chr3:43102416-43102417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43101835..43104302-chr3:43113340..43115119,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13078406	0.81[JPT][hapmap]
rs13080201	0.82[JPT][hapmap]
rs17390473	0.84[AFR][1000 genomes]
rs17455509	0.82[JPT][hapmap]
rs17469719	0.82[JPT][hapmap];1.00[AFR][1000 genomes]
rs35946401	1.00[AFR][1000 genomes]
rs6783218	0.82[JPT][hapmap]
rs73074962	0.85[AFR][1000 genomes]
rs7624799	0.82[JPT][hapmap]
rs7643433	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43092800-43117800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:43093400-43120200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:43094200-43104200	Weak transcription	Gastric	stomach
4	chr3:43094400-43114800	Weak transcription	Brain Anterior Caudate	brain
5	chr3:43095000-43114800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:43095800-43104400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:43096200-43121200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:43096800-43102600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:43097200-43104600	Weak transcription	Brain Substantia Nigra	brain
10	chr3:43098800-43104200	Weak transcription	Ovary	ovary
11	chr3:43100200-43120200	Weak transcription	Brain Angular Gyrus	brain
12	chr3:43101000-43102600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:43101000-43102800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr3:43101000-43105000	Enhancers	Fetal Thymus	thymus
15	chr3:43101200-43102800	Enhancers	Primary T cells from cord blood	blood
16	chr3:43101200-43102800	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr3:43101200-43103200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr3:43101200-43103200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr3:43101400-43102600	Enhancers	Thymus	Thymus
20	chr3:43101400-43102800	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr3:43101400-43102800	Strong transcription	Brain Hippocampus Middle	brain
22	chr3:43101600-43102600	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr3:43101600-43102600	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr3:43101600-43121000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:43101800-43103200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr3:43101800-43103200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr3:43101800-43105000	ZNF genes & repeats	Fetal Stomach	stomach
28	chr3:43102000-43103200	Weak transcription	Right Atrium	heart
29	chr3:43102000-43104000	Weak transcription	Placenta	Placenta
30	chr3:43102000-43121000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:43102200-43103000	Enhancers	Fetal Muscle Leg	muscle
32	chr3:43102400-43102600	Enhancers	Fetal Muscle Trunk	muscle
33	chr3:43102400-43103000	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr3:43102400-43103200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
35	chr3:43102400-43103400	ZNF genes & repeats	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links