Variant report

Variant	rs10754148
Chromosome Location	chr1:195711255-195711256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:195707846..195709349-chr1:195709392..195711387,2	K562	blood:
2	chr1:195710497..195713809-chr1:195716668..195718919,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10218789	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10494730	0.86[ASN][1000 genomes]
rs10801446	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10801447	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10921893	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10921895	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10921896	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10921898	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10921899	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10921904	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10921908	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10921913	0.85[ASN][1000 genomes]
rs11811129	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12029959	0.85[ASN][1000 genomes]
rs12034483	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12035482	0.85[ASN][1000 genomes]
rs12035852	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12085765	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1576765	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2104875	0.83[ASN][1000 genomes]
rs2895786	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2942922	0.85[ASN][1000 genomes]
rs2989977	0.84[ASN][1000 genomes]
rs2989978	0.84[ASN][1000 genomes]
rs2989979	0.81[ASN][1000 genomes]
rs4010	0.87[ASN][1000 genomes]
rs6676223	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72734161	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs965614	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9970789	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872894	chr1:195053221-195745968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1009307	chr1:195368381-195726703	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872932	chr1:195447286-195736070	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195702800-195712200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:195708000-195712400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:195709800-195711600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:195710600-195713600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:195710800-195711400	Active TSS	Primary T cells from cord blood	blood
6	chr1:195710800-195711600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:195710800-195711600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:195710800-195711600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:195710800-195711600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr1:195711000-195711400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:195711000-195711400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:195711000-195711400	Active TSS	GM12878-XiMat	blood
13	chr1:195711000-195711400	Active TSS	HSMM	muscle
14	chr1:195711200-195711400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr1:195711200-195711600	Enhancers	HUES64 Cell Line	embryonic stem cell

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