Variant report

Variant	rs10756665
Chromosome Location	chr9:15439453-15439454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10081655	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10115540	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10481556	0.89[EUR][1000 genomes]
rs10511611	0.83[AFR][1000 genomes]
rs10733292	1.00[ASN][1000 genomes]
rs10738392	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10756663	0.88[EUR][1000 genomes]
rs10756664	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756667	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10756668	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10756669	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10962036	0.83[ASN][1000 genomes]
rs1123038	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13248	0.84[AFR][1000 genomes]
rs16933311	0.85[AFR][1000 genomes]
rs16933316	0.85[AFR][1000 genomes]
rs1976599	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1983207	0.83[EUR][1000 genomes]
rs2136710	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2175258	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2382529	0.86[EUR][1000 genomes]
rs2737829	0.82[EUR][1000 genomes]
rs2737831	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2737835	0.82[EUR][1000 genomes]
rs2737842	0.81[EUR][1000 genomes]
rs4741498	0.86[EUR][1000 genomes]
rs4741500	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4741503	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4741504	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4741506	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60046377	0.81[AFR][1000 genomes]
rs6474918	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6474923	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7023290	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7026970	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7029985	0.85[EUR][1000 genomes]
rs7034447	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7040353	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7042165	1.00[EUR][1000 genomes]
rs7046713	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7470309	0.88[ASN][1000 genomes]
rs7470323	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7857850	0.87[ASN][1000 genomes]
rs9650683	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1030287	chr9:15332709-15458001	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv831520	chr9:15404866-15444447	Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
7	nsv892628	chr9:15420805-15528290	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15424000-15443400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:15424000-15443600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:15426200-15441800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:15426400-15439800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:15426400-15441800	Weak transcription	Spleen	Spleen
6	chr9:15426400-15442800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:15426400-15443600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:15426400-15443600	Weak transcription	Gastric	stomach
9	chr9:15426400-15468200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:15426600-15442400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr9:15426600-15443400	Weak transcription	Fetal Heart	heart
12	chr9:15427000-15443400	Weak transcription	NHEK	skin
13	chr9:15431400-15439800	Weak transcription	Hela-S3	cervix
14	chr9:15431400-15441800	Weak transcription	Lung	lung
15	chr9:15431400-15442400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:15431400-15442800	Weak transcription	Brain Angular Gyrus	brain
17	chr9:15431400-15443400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr9:15431400-15443400	Weak transcription	Pancreas	Pancrea
19	chr9:15431400-15443600	Weak transcription	Aorta	Aorta
20	chr9:15431400-15443600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr9:15431400-15443600	Weak transcription	Esophagus	oesophagus
22	chr9:15431400-15445800	Weak transcription	Right Ventricle	heart
23	chr9:15431400-15446000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr9:15431400-15447800	Weak transcription	Psoas Muscle	Psoas
25	chr9:15431600-15443400	Weak transcription	Stomach Mucosa	stomach
26	chr9:15432200-15443600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr9:15433000-15440600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:15433000-15440600	Strong transcription	Fetal Intestine Large	intestine
29	chr9:15433400-15492400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:15433600-15440600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:15433600-15440600	Strong transcription	Fetal Thymus	thymus
32	chr9:15433600-15441000	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr9:15433600-15441200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr9:15433600-15441200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr9:15433600-15442000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:15433800-15440400	Strong transcription	Primary hematopoietic stem cells	blood
37	chr9:15433800-15441200	Strong transcription	Fetal Lung	lung
38	chr9:15434000-15464000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:15434400-15443400	Weak transcription	Colon Smooth Muscle	Colon
40	chr9:15434400-15443600	Weak transcription	Brain Hippocampus Middle	brain
41	chr9:15434400-15443600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr9:15434400-15443600	Weak transcription	K562	blood
43	chr9:15434400-15443800	Weak transcription	HSMMtube	muscle
44	chr9:15434600-15441200	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr9:15434600-15441800	Weak transcription	Thymus	Thymus
46	chr9:15434800-15441200	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr9:15434800-15442600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr9:15434800-15443600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr9:15434800-15443600	Weak transcription	Stomach Smooth Muscle	stomach
50	chr9:15435000-15443200	Weak transcription	Brain Anterior Caudate	brain

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