Variant report

Variant	rs10756673
Chromosome Location	chr9:15556533-15556534
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10118359	0.80[EUR][1000 genomes]
rs10121591	0.81[EUR][1000 genomes]
rs10738399	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10810397	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810399	0.84[ASN][1000 genomes]
rs10810416	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10810419	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10810422	0.82[EUR][1000 genomes]
rs10810424	0.80[EUR][1000 genomes]
rs10810426	0.82[EUR][1000 genomes]
rs10962106	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11792937	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13301516	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs169342	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs183928	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1848582	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs192466	0.84[EUR][1000 genomes]
rs2457265	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2457637	0.83[EUR][1000 genomes]
rs2663300	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs276436	0.80[EUR][1000 genomes]
rs276441	0.83[AMR][1000 genomes]
rs276443	0.85[AMR][1000 genomes]
rs276444	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs276447	0.87[AMR][1000 genomes]
rs276448	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs276449	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs276453	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs276454	0.84[EUR][1000 genomes]
rs276455	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2821545	0.87[EUR][1000 genomes]
rs3119699	0.85[EUR][1000 genomes]
rs3122702	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs432452	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs433849	0.86[EUR][1000 genomes]
rs442549	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs451878	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4740614	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4741516	0.80[EUR][1000 genomes]
rs6474930	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6474946	0.80[EUR][1000 genomes]
rs7023275	0.83[EUR][1000 genomes]
rs7030846	0.81[EUR][1000 genomes]
rs7031365	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7034484	0.81[EUR][1000 genomes]
rs7036875	0.82[EUR][1000 genomes]
rs7042475	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7044122	0.88[ASN][1000 genomes]
rs7046351	0.81[EUR][1000 genomes]
rs770524	0.85[EUR][1000 genomes]
rs7848511	0.81[EUR][1000 genomes]
rs7851056	0.82[EUR][1000 genomes]
rs7851323	0.83[AMR][1000 genomes]
rs7866629	0.84[AMR][1000 genomes]
rs7873152	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7874533	0.88[ASN][1000 genomes]
rs7875367	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9407624	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9650684	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv892630	chr9:15554960-15694690	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15553800-15576200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:15553800-15580600	Weak transcription	Ovary	ovary
3	chr9:15553800-15592600	Weak transcription	Left Ventricle	heart
4	chr9:15554000-15564400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:15554000-15590200	Weak transcription	Fetal Stomach	stomach
6	chr9:15554400-15579400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:15554600-15563600	Weak transcription	Fetal Thymus	thymus
8	chr9:15554600-15580800	Weak transcription	Brain Anterior Caudate	brain
9	chr9:15554800-15559400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:15554800-15559600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:15554800-15560800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr9:15555200-15559400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:15555600-15561600	Weak transcription	Thymus	Thymus

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