Variant report

Variant	rs10756706
Chromosome Location	chr9:15798628-15798629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10119980	0.81[EUR][1000 genomes]
rs10121391	0.81[EUR][1000 genomes]
rs10217374	0.90[EUR][1000 genomes]
rs1039812	0.87[EUR][1000 genomes]
rs1039815	0.91[EUR][1000 genomes]
rs1039816	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10429512	0.83[AMR][1000 genomes]
rs10732334	0.94[EUR][1000 genomes]
rs10733296	0.87[EUR][1000 genomes]
rs10738407	0.90[EUR][1000 genomes]
rs10810445	0.91[EUR][1000 genomes]
rs10810447	0.94[EUR][1000 genomes]
rs1169469	1.00[YRI][hapmap]
rs1169471	1.00[YRI][hapmap]
rs1169472	1.00[YRI][hapmap]
rs1184568	1.00[YRI][hapmap]
rs12350267	0.87[EUR][1000 genomes]
rs1355172	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1417974	0.91[EUR][1000 genomes]
rs1417975	0.91[EUR][1000 genomes]
rs1417976	0.83[AMR][1000 genomes]
rs1509311	0.81[EUR][1000 genomes]
rs1553727	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs1572977	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1832818	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1848583	0.81[EUR][1000 genomes]
rs1891208	0.94[EUR][1000 genomes]
rs1935225	0.91[EUR][1000 genomes]
rs1964706	0.91[EUR][1000 genomes]
rs1970496	0.91[EUR][1000 genomes]
rs202321	0.81[EUR][1000 genomes]
rs2055773	0.87[EUR][1000 genomes]
rs2055774	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2089618	0.90[EUR][1000 genomes]
rs2096119	1.00[CEU][hapmap]
rs2136354	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2136357	0.91[EUR][1000 genomes]
rs2175083	0.87[EUR][1000 genomes]
rs2185664	0.94[EUR][1000 genomes]
rs2382531	0.81[EUR][1000 genomes]
rs2382533	0.90[EUR][1000 genomes]
rs2382535	0.90[EUR][1000 genomes]
rs2382536	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs276434	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs276437	1.00[CEU][hapmap]
rs276438	1.00[CEU][hapmap]
rs276440	0.81[EUR][1000 genomes]
rs276442	0.81[EUR][1000 genomes]
rs398117	1.00[CEU][hapmap];0.94[YRI][hapmap];0.81[EUR][1000 genomes]
rs398178	0.81[EUR][1000 genomes]
rs401393	1.00[CEU][hapmap];0.94[YRI][hapmap];0.81[EUR][1000 genomes]
rs4146288	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4146289	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4146292	0.94[EUR][1000 genomes]
rs4237140	0.81[EUR][1000 genomes]
rs4445326	0.81[EUR][1000 genomes]
rs4740623	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4741532	0.81[EUR][1000 genomes]
rs4741533	0.81[EUR][1000 genomes]
rs4741536	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4741537	0.97[EUR][1000 genomes]
rs4741540	0.88[EUR][1000 genomes]
rs6474941	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6474947	0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs6474949	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6474956	0.85[EUR][1000 genomes]
rs6474957	0.90[EUR][1000 genomes]
rs6474961	0.91[EUR][1000 genomes]
rs6474973	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6474976	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6474977	1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs6474979	1.00[YRI][hapmap]
rs7025247	0.91[EUR][1000 genomes]
rs7027040	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7035422	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7038920	0.90[EUR][1000 genomes]
rs7468716	0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs770193	1.00[YRI][hapmap]
rs770195	1.00[YRI][hapmap]
rs770196	0.94[YRI][hapmap]
rs770197	0.94[YRI][hapmap]
rs7847148	0.84[EUR][1000 genomes]
rs7849159	0.87[EUR][1000 genomes]
rs7865141	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs7865193	0.97[EUR][1000 genomes]
rs7865391	0.94[EUR][1000 genomes]
rs7866413	0.91[EUR][1000 genomes]
rs7870315	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7874094	0.94[EUR][1000 genomes]
rs9298734	0.81[EUR][1000 genomes]
rs9406543	0.83[AMR][1000 genomes]
rs958870	0.91[EUR][1000 genomes]
rs9919009	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv528964	chr9:15760822-15875162	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892636	chr9:15794858-15876507	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613660	chr9:15794897-15817119	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15777000-15810600	Weak transcription	Pancreas	Pancrea
2	chr9:15783600-15802000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:15785000-15808600	Weak transcription	Aorta	Aorta
4	chr9:15787200-15799600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr9:15790200-15800000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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