Variant report

Variant	rs10756772
Chromosome Location	chr9:16654768-16654769
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:16653386..16655989-chr9:16657272..16659036,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1029015	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10756773	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10962519	0.89[ASN][1000 genomes]
rs10962520	0.89[ASN][1000 genomes]
rs1415471	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1890074	0.87[EUR][1000 genomes]
rs2050617	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4961727	0.80[ASN][1000 genomes]
rs7043298	0.85[ASN][1000 genomes]
rs9886876	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv430000	chr9:16603483-16671045	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16640000-16670800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16646200-16656800	Weak transcription	HSMMtube	muscle
3	chr9:16646400-16656600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:16646600-16661000	Weak transcription	HSMM	muscle
5	chr9:16649200-16656000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:16650800-16657600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr9:16651200-16656800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:16651400-16656800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:16652400-16656800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:16652800-16654800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:16653400-16655800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr9:16653600-16654800	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr9:16653600-16657000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr9:16653800-16655800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr9:16653800-16656000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:16653800-16656000	Weak transcription	NHDF-Ad	bronchial
17	chr9:16654000-16655800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:16654200-16655000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:16654200-16655000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:16654200-16655000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:16654200-16655000	Enhancers	Fetal Stomach	stomach
22	chr9:16654200-16655800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:16654200-16656000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:16654200-16656000	Enhancers	Rectal Smooth Muscle	rectum
25	chr9:16654200-16656600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr9:16654200-16656800	Weak transcription	NH-A	brain
27	chr9:16654200-16660400	Weak transcription	Esophagus	oesophagus
28	chr9:16654400-16654800	Weak transcription	Adipose Nuclei	Adipose
29	chr9:16654400-16655000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:16654400-16655000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:16654400-16655000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:16654400-16655000	Enhancers	Liver	Liver
33	chr9:16654400-16655200	Enhancers	A549	lung
34	chr9:16654400-16655800	Weak transcription	Ovary	ovary
35	chr9:16654400-16655800	Weak transcription	Right Atrium	heart
36	chr9:16654400-16656000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr9:16654400-16656800	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr9:16654400-16657600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:16654400-16669200	Weak transcription	NHLF	lung
40	chr9:16654600-16654800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:16654600-16655000	Weak transcription	Fetal Intestine Large	intestine
42	chr9:16654600-16655000	Flanking Active TSS	Fetal Lung	lung
43	chr9:16654600-16655200	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr9:16654600-16655200	Enhancers	Stomach Smooth Muscle	stomach
45	chr9:16654600-16655600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr9:16654600-16657600	Enhancers	Colon Smooth Muscle	Colon
47	chr9:16654600-16657600	Enhancers	Osteobl	bone

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