Variant report
| Variant | rs10756902 |
|---|---|
| Chromosome Location | chr9:17710876-17710877 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10756899 | 0.81[CHB][hapmap] |
| rs10756901 | 0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10756904 | 1.00[ASW][hapmap];0.91[CEU][hapmap];0.87[CHD][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap] |
| rs10810829 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10810830 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10810834 | 1.00[CEU][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap] |
| rs10963233 | 0.86[CEU][hapmap];0.88[CHD][hapmap] |
| rs1536072 | 1.00[ASW][hapmap];0.95[CEU][hapmap];0.86[CHB][hapmap];0.80[CHD][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap] |
| rs1536076 | 0.80[CEU][hapmap] |
| rs717372 | 1.00[ASW][hapmap];0.95[CEU][hapmap];0.81[CHB][hapmap];0.89[MEX][hapmap];0.93[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016971 | chr9:17648242-17720176 | Enhancers Weak transcription Active TSS Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 2 | nsv1021022 | chr9:17649360-17723730 | Enhancers Weak transcription Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv892675 | chr9:17694823-17790526 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv466279 | chr9:17699981-17726581 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv613705 | chr9:17699981-17726581 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10756902 | SH3GL2 | cis | parietal | SCAN |
| rs10756902 | IFNA21 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
