Variant report

Variant	rs10756910
Chromosome Location	chr9:17735483-17735484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1000770	0.91[CHB][hapmap]
rs10118522	0.91[CHB][hapmap]
rs10738482	0.87[CHB][hapmap]
rs10738485	0.91[CHB][hapmap]
rs10756896	0.85[CHB][hapmap]
rs10810817	0.82[CHB][hapmap]
rs10810821	0.91[CHB][hapmap];0.83[MEX][hapmap]
rs10810822	0.86[CHB][hapmap]
rs10810828	0.91[CHB][hapmap]
rs10963190	0.86[CHB][hapmap]
rs10963210	0.86[CHB][hapmap]
rs10963234	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536064	0.85[CHB][hapmap]
rs1536065	0.82[CHB][hapmap]
rs1536066	0.91[CHB][hapmap];0.87[CHD][hapmap];0.86[ASN][1000 genomes]
rs2147735	0.95[CHB][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap]
rs2147736	0.82[CHB][hapmap]
rs2182084	0.87[CHB][hapmap]
rs2182085	0.82[CHB][hapmap]
rs2182090	0.82[CHB][hapmap]
rs2209433	0.91[CHB][hapmap]
rs2209435	0.87[CHB][hapmap]
rs2383044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780232	0.91[CHB][hapmap]
rs3780234	0.87[CHB][hapmap]
rs3780235	0.87[CHB][hapmap]
rs3780236	0.86[CHB][hapmap]
rs3808700	0.86[CHB][hapmap]
rs3808704	0.91[CHB][hapmap]
rs3808707	0.91[CHB][hapmap]
rs3808708	0.91[CHB][hapmap]
rs3808709	0.91[CHB][hapmap]
rs3808711	0.91[CHB][hapmap]
rs3808712	0.91[CHB][hapmap]
rs3808713	0.91[CHB][hapmap]
rs3808714	0.87[CHB][hapmap]
rs3808716	0.91[CHB][hapmap]
rs3808717	0.91[CHB][hapmap]
rs3808718	0.82[CHB][hapmap]
rs3808719	0.82[CHB][hapmap]
rs3808720	0.86[CHB][hapmap]
rs3808721	0.86[CHB][hapmap]
rs3808723	0.82[CHB][hapmap]
rs3824383	0.85[CHB][hapmap]
rs4418424	0.87[CHB][hapmap]
rs4578059	0.86[CHB][hapmap]
rs4601434	0.91[CHB][hapmap]
rs7020158	0.86[CHB][hapmap]
rs7021836	0.91[CHB][hapmap]
rs7856894	0.87[CHB][hapmap]
rs7858624	0.87[CHB][hapmap]
rs7870919	0.87[CHB][hapmap]
rs7874762	0.87[CHB][hapmap]
rs961372	0.82[CHB][hapmap]
rs998599	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1033892	chr9:17734224-17757581	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv3359650	chr9:17735266-17735842	Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10756910	SH3GL2	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links