Variant report

Variant	rs10756912
Chromosome Location	chr9:17782771-17782772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10738489	0.83[AMR][1000 genomes]
rs10810851	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10810852	0.86[AMR][1000 genomes]
rs10810853	0.83[AMR][1000 genomes]
rs10810854	0.81[AMR][1000 genomes]
rs10963281	0.87[AMR][1000 genomes]
rs2182091	0.80[ASN][1000 genomes]
rs2209428	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2209431	0.80[ASN][1000 genomes]
rs2209432	0.80[ASN][1000 genomes]
rs2224954	0.97[ASN][1000 genomes]
rs2224955	0.80[ASN][1000 genomes]
rs3736897	0.82[AMR][1000 genomes]
rs3808667	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3808670	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3808681	0.85[ASN][1000 genomes]
rs4302936	0.87[AMR][1000 genomes]
rs4373621	0.85[AMR][1000 genomes]
rs4510955	0.86[AMR][1000 genomes]
rs4523358	0.86[AMR][1000 genomes]
rs4961449	0.85[AMR][1000 genomes]
rs6475174	0.81[AMR][1000 genomes]
rs7028412	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7032367	0.81[AMR][1000 genomes]
rs7041545	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9298783	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9298784	0.81[AMR][1000 genomes]
rs9406711	0.84[AMR][1000 genomes]
rs9407874	0.85[AMR][1000 genomes]
rs9407875	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892675	chr9:17694823-17790526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3450929	chr9:17782742-17783097	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17764600-17782800	Weak transcription	Gastric	stomach
2	chr9:17776800-17786200	Weak transcription	Fetal Brain Male	brain
3	chr9:17778800-17784000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:17780200-17787200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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