Variant report

Variant	rs10759258
Chromosome Location	chr9:110543330-110543331
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10118587	0.84[AFR][1000 genomes]
rs10512380	0.94[EUR][1000 genomes]
rs10816568	0.94[EUR][1000 genomes]
rs10816569	0.94[EUR][1000 genomes]
rs10979040	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1330149	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411357	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467311	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17625771	0.84[AFR][1000 genomes]
rs1831382	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1970014	0.83[ASN][1000 genomes]
rs2104759	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2140480	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2140483	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28399092	0.84[AFR][1000 genomes]
rs4979370	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7040755	0.95[EUR][1000 genomes]
rs944172	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv6657	chr9:110533206-110545471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110518200-110544600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:110536600-110546600	Weak transcription	Spleen	Spleen
3	chr9:110541200-110543600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:110541200-110544800	Weak transcription	HSMM	muscle
5	chr9:110541400-110547400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:110541600-110544200	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:110542000-110544800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr9:110542000-110547400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr9:110543200-110543600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:110543200-110544200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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