Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10761548	0.90[ASN][1000 genomes]
rs10821825	0.90[ASN][1000 genomes]
rs10821846	0.87[ASN][1000 genomes]
rs10821854	0.87[ASN][1000 genomes]
rs10821859	0.87[ASN][1000 genomes]
rs10994489	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10994492	0.88[ASN][1000 genomes]
rs10994504	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12358745	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16751	0.87[ASN][1000 genomes]
rs4245009	0.85[ASN][1000 genomes]
rs4268458	0.87[ASN][1000 genomes]
rs4531415	0.87[ASN][1000 genomes]
rs4550168	0.88[ASN][1000 genomes]
rs4617537	0.88[ASN][1000 genomes]
rs4935006	0.90[ASN][1000 genomes]
rs4935007	0.88[ASN][1000 genomes]
rs4935191	0.88[ASN][1000 genomes]
rs4935192	0.88[ASN][1000 genomes]
rs7089428	0.87[ASN][1000 genomes]
rs7895606	0.88[ASN][1000 genomes]
rs7913937	0.88[ASN][1000 genomes]
rs7917358	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10761546	CTSLP4	cis	Thyroid	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52547400-52548400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr10:52547400-52548800	Enhancers	Stomach Mucosa	stomach
3	chr10:52547400-52549200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr10:52547600-52548400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:52547600-52548400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:52547600-52548800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:52547600-52549000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:52547600-52549200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr10:52548000-52548400	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr10:52548000-52548400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr10:52548000-52548800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr10:52548200-52548600	Enhancers	Primary T cells from cord blood	blood
13	chr10:52548200-52548800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr10:52548200-52549400	Enhancers	HUES64 Cell Line	embryonic stem cell

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