Variant report

Variant	rs10761811
Chromosome Location	chr10:52868687-52868688
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10508935	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10761807	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10761810	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10761831	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10822194	0.83[AMR][1000 genomes]
rs10822197	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10822198	0.82[AMR][1000 genomes]
rs10822210	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10822211	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10822229	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10822230	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10995617	0.96[EUR][1000 genomes]
rs10995620	0.80[EUR][1000 genomes]
rs10995651	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10995655	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10995673	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10995681	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12220644	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12221226	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12415785	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16913900	0.95[EUR][1000 genomes]
rs16913956	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2339675	0.83[AMR][1000 genomes]
rs2879544	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9414805	0.90[EUR][1000 genomes]
rs9414807	0.88[EUR][1000 genomes]
rs9414809	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv825378	chr10:52855771-52908439	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52844000-52877200	Weak transcription	Fetal Stomach	stomach
2	chr10:52853000-52871200	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:52856600-52877200	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:52857600-52877200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr10:52858800-52873000	Weak transcription	Aorta	Aorta
6	chr10:52864200-52869000	Weak transcription	HUVEC	blood vessel
7	chr10:52864800-52870200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:52867400-52876400	Weak transcription	Left Ventricle	heart
9	chr10:52867600-52871800	Enhancers	NHDF-Ad	bronchial
10	chr10:52867600-52876000	Weak transcription	Psoas Muscle	Psoas
11	chr10:52867800-52870400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:52868000-52869200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:52868200-52869400	Enhancers	NH-A	brain
14	chr10:52868200-52870000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:52868200-52870000	Enhancers	NHLF	lung
16	chr10:52868200-52870200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:52868200-52870400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:52868200-52870400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:52868200-52870400	Enhancers	HSMM	muscle
20	chr10:52868200-52870400	Enhancers	NHEK	skin
21	chr10:52868200-52870800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:52868200-52871000	Enhancers	HMEC	breast
23	chr10:52868200-52871400	Enhancers	Osteobl	bone
24	chr10:52868400-52870400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:52868600-52869800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:52868600-52870200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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