Variant report

Variant	rs10766354
Chromosome Location	chr11:16913292-16913293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16912383..16915251-chr11:16918244..16921230,3	K562	blood:
2	chr11:16912383..16915657-chr11:16918244..16920114,3	K562	blood:
3	chr11:16910866..16914588-chr11:16915188..16918653,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10741716	0.81[JPT][hapmap]
rs10766355	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11024074	0.85[JPT][hapmap];0.83[AFR][1000 genomes]
rs11829035	0.88[JPT][hapmap]
rs177542	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs177543	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2041236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2215085	0.86[CHB][hapmap]
rs365215	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs370161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs373789	0.90[ASN][1000 genomes]
rs378755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs379765	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs382734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs384735	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs385228	0.90[ASN][1000 genomes]
rs392500	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs392509	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs402973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs415300	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs416258	0.90[JPT][hapmap];0.83[AFR][1000 genomes]
rs426144	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs428120	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs432373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs433660	0.90[ASN][1000 genomes]
rs439036	0.90[ASN][1000 genomes]
rs442389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs450954	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4757444	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs4757446	0.86[CHB][hapmap]
rs55646909	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7117745	0.81[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7128212	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7481080	0.87[CEU][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16903600-16914400	Weak transcription	Right Atrium	heart
2	chr11:16905200-16913600	Weak transcription	Gastric	stomach
3	chr11:16905200-16913600	Weak transcription	Pancreas	Pancrea
4	chr11:16910000-16913600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:16910000-16917800	Weak transcription	Lung	lung
6	chr11:16911200-16916000	Enhancers	Stomach Mucosa	stomach
7	chr11:16911600-16914800	Weak transcription	Fetal Intestine Small	intestine
8	chr11:16912200-16914400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:16912200-16923600	Weak transcription	A549	lung
10	chr11:16912400-16914000	Enhancers	Placenta	Placenta
11	chr11:16912400-16919400	Weak transcription	Liver	Liver
12	chr11:16912600-16913400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:16912600-16914200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:16912600-16915600	Enhancers	NHDF-Ad	bronchial
15	chr11:16912600-16915800	Enhancers	HMEC	breast
16	chr11:16912600-16916000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:16912600-16916000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:16912800-16913600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:16912800-16913800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:16912800-16913800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:16912800-16914000	Enhancers	HSMMtube	muscle
22	chr11:16912800-16914000	Enhancers	NHEK	skin
23	chr11:16912800-16914600	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr11:16912800-16915600	Enhancers	Osteobl	bone
25	chr11:16913000-16913600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:16913000-16913800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr11:16913000-16913800	Flanking Active TSS	Fetal Heart	heart
28	chr11:16913000-16914000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:16913000-16914000	Enhancers	HSMM	muscle
30	chr11:16913000-16914400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:16913000-16918400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:16913200-16913400	Enhancers	Duodenum Mucosa	Duodenum
33	chr11:16913200-16913600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:16913200-16913800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:16913200-16913800	Enhancers	Hela-S3	cervix
36	chr11:16913200-16914000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:16913200-16914600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr11:16913200-16914600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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