Variant report

Variant	rs10766356
Chromosome Location	chr11:16918796-16918797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16918607..16920232-chr8:87576439..87578551,2	MCF-7	breast:
2	chr11:16912383..16915657-chr11:16918244..16920114,3	K562	blood:
3	chr11:16912383..16915251-chr11:16918244..16921230,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10741712	0.89[YRI][hapmap]
rs10741716	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10766354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766355	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024074	0.85[JPT][hapmap]
rs11829035	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs177542	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs177543	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2041236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215085	0.80[CEU][hapmap];0.87[CHB][hapmap]
rs365215	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs370161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs371303	0.87[YRI][hapmap]
rs373789	0.92[ASN][1000 genomes]
rs378755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs379765	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs382734	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs384735	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs385228	0.92[ASN][1000 genomes]
rs392500	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs392509	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs393625	0.92[YRI][hapmap]
rs402838	0.87[YRI][hapmap]
rs402973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs415300	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs416258	0.90[JPT][hapmap]
rs426144	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs428120	0.90[ASN][1000 genomes]
rs432373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs433660	0.92[ASN][1000 genomes]
rs439036	0.92[ASN][1000 genomes]
rs442389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs450954	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756878	0.80[CHB][hapmap]
rs4757444	0.81[CEU][hapmap];0.87[CHB][hapmap]
rs4757446	0.80[CEU][hapmap];0.87[CHB][hapmap]
rs55646909	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7117745	0.81[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap]
rs7121911	0.80[CHB][hapmap]
rs7128212	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7481080	0.87[CEU][hapmap]
rs7931794	0.80[CHB][hapmap]
rs982550	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2757425	chr11:16915291-16934130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759805	chr11:16915291-16934130	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1038987	chr11:16916438-16927022	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2754709	chr11:16917219-16927022	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16912200-16923600	Weak transcription	A549	lung
2	chr11:16912400-16919400	Weak transcription	Liver	Liver
3	chr11:16913800-16921800	Enhancers	Fetal Heart	heart
4	chr11:16914000-16927400	Weak transcription	HSMMtube	muscle
5	chr11:16914400-16919200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:16914600-16921200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:16915800-16919000	Weak transcription	Right Atrium	heart
8	chr11:16915800-16921400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:16915800-16921400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:16915800-16922800	Weak transcription	HMEC	breast
11	chr11:16916000-16918800	Weak transcription	Adipose Nuclei	Adipose
12	chr11:16916000-16919000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:16916000-16923000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:16916000-16924400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:16916000-16931000	Weak transcription	Spleen	Spleen
16	chr11:16916800-16919000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:16916800-16920200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:16917200-16919400	Enhancers	Gastric	stomach
19	chr11:16917600-16919200	Weak transcription	NHDF-Ad	bronchial
20	chr11:16917600-16920200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:16917800-16919200	Enhancers	Brain Germinal Matrix	brain
22	chr11:16917800-16922000	Enhancers	Stomach Mucosa	stomach
23	chr11:16918000-16918800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
24	chr11:16918000-16918800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
25	chr11:16918000-16919000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:16918000-16919600	Enhancers	Right Ventricle	heart
27	chr11:16918200-16919000	Enhancers	Fetal Brain Female	brain
28	chr11:16918200-16919000	Enhancers	Fetal Intestine Small	intestine
29	chr11:16918200-16919000	Weak transcription	Left Ventricle	heart
30	chr11:16918200-16919200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:16918200-16919800	Enhancers	Fetal Lung	lung
32	chr11:16918200-16922400	Enhancers	Fetal Intestine Large	intestine
33	chr11:16918200-16924800	Weak transcription	Colonic Mucosa	Colon
34	chr11:16918400-16918800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
35	chr11:16918400-16919000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
36	chr11:16918400-16919000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
37	chr11:16918400-16919200	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr11:16918400-16919200	Enhancers	Pancreas	Pancrea
39	chr11:16918400-16919600	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr11:16918400-16919800	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr11:16918400-16919800	Enhancers	Small Intestine	intestine
42	chr11:16918400-16920600	Enhancers	H9 Cell Line	embryonic stem cell
43	chr11:16918600-16918800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr11:16918600-16919200	Enhancers	H1 Cell Line	embryonic stem cell
45	chr11:16918600-16919200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:16918600-16919400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
47	chr11:16918600-16919400	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr11:16918600-16919400	Weak transcription	Fetal Kidney	kidney
49	chr11:16918600-16920400	Enhancers	Brain Anterior Caudate	brain
50	chr11:16918600-16922000	Enhancers	Duodenum Mucosa	Duodenum

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