Variant report

Variant	rs10766450
Chromosome Location	chr11:18039056-18039057
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10488683	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12292915	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs172424	0.87[EUR][1000 genomes]
rs2108977	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs211114	0.80[EUR][1000 genomes]
rs211115	0.80[EUR][1000 genomes]
rs211128	0.80[EUR][1000 genomes]
rs211130	0.80[EUR][1000 genomes]
rs211131	0.80[EUR][1000 genomes]
rs211135	0.87[EUR][1000 genomes]
rs211136	0.87[EUR][1000 genomes]
rs211137	0.87[EUR][1000 genomes]
rs2299623	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3741200	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3741201	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3741202	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3958112	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs484616	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv832079	chr11:17927967-18047743	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10766450	SERGEF	cis	Muscle Skeletal	GTEx
rs10766450	SERGEF	cis	Esophagus Mucosa	GTEx
rs10766450	SERGEF	cis	lung	GTEx
rs10766450	RP1-59M18.2	cis	Muscle Skeletal	GTEx
rs10766450	SERGEF	cis	Adipose Subcutaneous	GTEx
rs10766450	RP1-59M18.2	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18035600-18048600	Weak transcription	Ovary	ovary
2	chr11:18036000-18040000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:18036000-18046000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:18036400-18041000	Weak transcription	Aorta	Aorta
5	chr11:18036800-18045400	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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