Variant report

Variant	rs10768124
Chromosome Location	chr11:35304064-35304065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35303423..35306027-chr11:35316239..35317817,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10742334	0.84[EUR][1000 genomes]
rs10742335	0.85[EUR][1000 genomes]
rs10742336	0.85[EUR][1000 genomes]
rs10742337	0.85[EUR][1000 genomes]
rs10836354	0.85[EUR][1000 genomes]
rs11033037	0.85[EUR][1000 genomes]
rs11033038	0.85[EUR][1000 genomes]
rs11033052	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1321677	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2180973	0.84[EUR][1000 genomes]
rs2236273	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2421765	0.80[EUR][1000 genomes]
rs2421823	0.96[EUR][1000 genomes]
rs3794096	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3818275	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3847605	0.80[EUR][1000 genomes]
rs3847606	0.80[EUR][1000 genomes]
rs3847607	0.81[EUR][1000 genomes]
rs3847608	0.80[EUR][1000 genomes]
rs3847609	0.80[EUR][1000 genomes]
rs3903687	0.83[AMR][1000 genomes]
rs4755393	0.85[EUR][1000 genomes]
rs4756200	0.85[EUR][1000 genomes]
rs4756208	0.80[EUR][1000 genomes]
rs7105418	0.84[EUR][1000 genomes]
rs7130385	0.97[EUR][1000 genomes]
rs7929900	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7936564	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35265800-35305800	Weak transcription	HepG2	liver
2	chr11:35270400-35307000	Weak transcription	Fetal Brain Male	brain
3	chr11:35285800-35308800	Weak transcription	Gastric	stomach
4	chr11:35298000-35317200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:35298200-35326000	Weak transcription	Brain Substantia Nigra	brain
6	chr11:35298800-35306000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:35299000-35308800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:35299000-35326600	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:35299600-35309800	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:35299800-35328600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:35300400-35309800	Strong transcription	Fetal Brain Female	brain
12	chr11:35302200-35304200	Enhancers	Left Ventricle	heart
13	chr11:35302200-35304600	Enhancers	Fetal Muscle Leg	muscle
14	chr11:35302200-35304600	Enhancers	Right Atrium	heart
15	chr11:35302200-35304800	Enhancers	NHDF-Ad	bronchial
16	chr11:35302200-35305000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:35302400-35327000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:35302600-35304800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr11:35302600-35305000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr11:35302600-35309800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:35302600-35329000	Weak transcription	Brain Angular Gyrus	brain
22	chr11:35302800-35304600	Enhancers	HSMM	muscle
23	chr11:35302800-35304800	Enhancers	NHLF	lung
24	chr11:35303000-35304200	Enhancers	Placenta	Placenta
25	chr11:35303000-35307000	Weak transcription	Brain Germinal Matrix	brain
26	chr11:35303200-35304600	Enhancers	Aorta	Aorta
27	chr11:35303200-35304600	Enhancers	Rectal Smooth Muscle	rectum
28	chr11:35303400-35304800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:35303600-35304400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr11:35303600-35304600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:35303600-35304600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:35303600-35304600	Enhancers	Pancreas	Pancrea
33	chr11:35303600-35304600	Enhancers	Stomach Smooth Muscle	stomach
34	chr11:35303600-35304600	Enhancers	Osteobl	bone
35	chr11:35303600-35304800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:35303600-35304800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:35303600-35304800	Enhancers	A549	lung
38	chr11:35303800-35304200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:35303800-35304200	Weak transcription	Esophagus	oesophagus
40	chr11:35303800-35304200	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr11:35303800-35304600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr11:35303800-35304600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:35303800-35304600	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr11:35303800-35304600	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr11:35303800-35304600	Enhancers	Stomach Mucosa	stomach
46	chr11:35303800-35304600	Enhancers	Hela-S3	cervix
47	chr11:35303800-35304600	Enhancers	NH-A	brain
48	chr11:35304000-35304600	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr11:35304000-35304600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:35304000-35304600	Enhancers	HSMMtube	muscle

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