Variant report

Variant	rs10769239
Chromosome Location	chr11:47130540-47130541
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10466478	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1055447	0.90[ASN][1000 genomes]
rs1060573	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769230	0.86[ASN][1000 genomes]
rs10769233	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769234	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838654	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838659	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838660	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11039074	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039086	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039097	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11039105	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11039107	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11039112	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11039119	0.92[ASN][1000 genomes]
rs11039124	0.89[ASN][1000 genomes]
rs11039134	0.83[ASN][1000 genomes]
rs11600668	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12224096	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12291341	0.84[ASN][1000 genomes]
rs12796744	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12807887	0.89[ASN][1000 genomes]
rs1872896	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1965952	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1976142	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1976143	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2018527	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2029298	0.84[ASN][1000 genomes]
rs4237547	0.84[ASN][1000 genomes]
rs4319472	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4567413	0.84[ASN][1000 genomes]
rs4579897	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4752952	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4752957	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4752962	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4752963	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4752967	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4752971	0.89[ASN][1000 genomes]
rs57323109	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6485721	0.89[ASN][1000 genomes]
rs6485722	0.87[ASN][1000 genomes]
rs6485739	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7103581	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7108902	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7111764	0.84[ASN][1000 genomes]
rs7118546	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7119952	0.86[ASN][1000 genomes]
rs7121418	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7125807	0.89[ASN][1000 genomes]
rs7128325	0.89[ASN][1000 genomes]
rs747650	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7479189	0.92[ASN][1000 genomes]
rs7937101	0.84[ASN][1000 genomes]
rs7937950	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7942473	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7945315	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7946709	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7947878	0.84[ASN][1000 genomes]
rs9633886	0.86[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47121200-47130600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:47121200-47132600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:47121600-47140200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:47122400-47140400	Weak transcription	Pancreas	Pancrea
5	chr11:47123000-47132600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:47124600-47132800	Weak transcription	Thymus	Thymus
7	chr11:47124600-47133000	Weak transcription	Fetal Thymus	thymus
8	chr11:47124600-47159000	Weak transcription	Primary T cells from cord blood	blood
9	chr11:47125200-47132400	Enhancers	Fetal Muscle Leg	muscle
10	chr11:47125400-47133400	Enhancers	Fetal Lung	lung
11	chr11:47126400-47132000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:47126600-47130800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:47126600-47133200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:47126800-47130600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:47126800-47130600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:47126800-47130600	Weak transcription	NHDF-Ad	bronchial
17	chr11:47126800-47130800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:47126800-47130800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:47126800-47130800	Weak transcription	NH-A	brain
20	chr11:47126800-47131000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:47126800-47131200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:47127000-47130800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:47127000-47131200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:47127400-47130600	Weak transcription	HSMM	muscle
25	chr11:47127600-47132200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:47127600-47133400	Enhancers	Fetal Brain Male	brain
27	chr11:47128000-47131800	Enhancers	Fetal Stomach	stomach
28	chr11:47128400-47132800	Weak transcription	Fetal Intestine Large	intestine
29	chr11:47128400-47133000	Weak transcription	Lung	lung
30	chr11:47128600-47131000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:47128600-47131000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr11:47128600-47140600	Weak transcription	NHEK	skin
33	chr11:47128800-47130800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:47128800-47131000	Weak transcription	Fetal Kidney	kidney
35	chr11:47128800-47132400	Enhancers	Brain Angular Gyrus	brain
36	chr11:47128800-47143400	Weak transcription	Gastric	stomach
37	chr11:47129000-47130800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:47129000-47130800	Weak transcription	Stomach Mucosa	stomach
39	chr11:47129000-47130800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr11:47129000-47131200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr11:47129000-47131800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:47129000-47131800	Enhancers	Brain Cingulate Gyrus	brain
43	chr11:47129000-47132200	Enhancers	Brain Anterior Caudate	brain
44	chr11:47129200-47130600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:47129200-47130600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr11:47129200-47130600	Weak transcription	HSMMtube	muscle
47	chr11:47129200-47131200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr11:47129200-47132000	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr11:47129200-47132400	Enhancers	Brain Hippocampus Middle	brain
50	chr11:47129400-47131200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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