Variant report

Variant	rs10769279
Chromosome Location	chr11:47611316-47611317
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47586895..47590126-chr11:47609798..47613644,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110536	Chromatin interaction
ENSG00000149187	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10690121	1.00[AMR][1000 genomes]
rs10769281	1.00[AMR][1000 genomes]
rs10769283	1.00[AMR][1000 genomes]
rs10838735	1.00[AMR][1000 genomes]
rs11039309	1.00[AMR][1000 genomes]
rs11039312	1.00[AMR][1000 genomes]
rs2233354	1.00[AMR][1000 genomes]
rs4256934	1.00[AMR][1000 genomes]
rs4284367	1.00[AMR][1000 genomes]
rs4303193	1.00[AMR][1000 genomes]
rs4331047	1.00[AMR][1000 genomes]
rs4418760	1.00[AMR][1000 genomes]
rs4434961	1.00[AMR][1000 genomes]
rs4486587	1.00[AMR][1000 genomes]
rs4623856	1.00[AMR][1000 genomes]
rs4752859	1.00[AMR][1000 genomes]
rs6416137	1.00[AMR][1000 genomes]
rs6485760	1.00[AMR][1000 genomes]
rs6485762	1.00[AMR][1000 genomes]
rs6485764	1.00[AMR][1000 genomes]
rs7103092	1.00[AMR][1000 genomes]
rs7105845	1.00[AMR][1000 genomes]
rs7106293	1.00[AMR][1000 genomes]
rs7107473	1.00[AMR][1000 genomes]
rs7109012	1.00[AMR][1000 genomes]
rs7118271	1.00[AMR][1000 genomes]
rs7129821	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv825872	chr11:47565425-47660330	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv825873	chr11:47609306-47616463	Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3418266	chr11:47610276-47613374	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3421537	chr11:47610601-47613149	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3434012	chr11:47610726-47613224	Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47601400-47611800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:47601400-47613400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:47603800-47612400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:47604000-47612000	Weak transcription	Small Intestine	intestine
5	chr11:47606000-47611400	Weak transcription	HMEC	breast
6	chr11:47606000-47614200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:47606200-47611400	Weak transcription	NH-A	brain
8	chr11:47606200-47612000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:47606200-47612600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:47606200-47614200	Weak transcription	A549	lung
11	chr11:47606200-47614600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:47606400-47612000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:47606400-47612400	Weak transcription	GM12878-XiMat	blood
14	chr11:47606600-47613400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr11:47606800-47611400	Weak transcription	Gastric	stomach
16	chr11:47606800-47611600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:47606800-47613200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:47606800-47613600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:47606800-47613600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:47607000-47611600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr11:47607000-47611600	Weak transcription	Pancreas	Pancrea
22	chr11:47607000-47612200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr11:47607000-47612800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr11:47607000-47613200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:47607000-47613200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr11:47607000-47613400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:47607000-47613400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:47607000-47632800	Weak transcription	Dnd41	blood
29	chr11:47607200-47612600	Weak transcription	Fetal Thymus	thymus
30	chr11:47607200-47613600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:47607600-47613000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr11:47607600-47613400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:47607800-47611400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:47607800-47613200	Weak transcription	Primary T cells from cord blood	blood
35	chr11:47608000-47611400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:47608200-47613400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr11:47608400-47613400	Enhancers	Primary hematopoietic stem cells	blood
38	chr11:47608600-47611400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:47608800-47611600	Weak transcription	Thymus	Thymus
40	chr11:47609200-47611600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:47609200-47613400	Weak transcription	Primary B cells from cord blood	blood
42	chr11:47609200-47614800	Weak transcription	Brain Angular Gyrus	brain
43	chr11:47609400-47611400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr11:47609400-47611600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:47609400-47614600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr11:47609600-47613400	Weak transcription	Brain Substantia Nigra	brain
47	chr11:47609800-47613200	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr11:47610200-47611600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
49	chr11:47610200-47613400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:47610400-47612000	ZNF genes & repeats	Placenta	Placenta

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