Variant report

Variant	rs10769282
Chromosome Location	chr11:47626492-47626493
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47612307..47616216-chr11:47626237..47629198,3	MCF-7	breast:
2	chr11:47625710..47627610-chr11:47631775..47635151,4	K562	blood:
3	chr11:47625880..47627610-chr11:47631920..47634659,2	K562	blood:
4	chr11:47600323..47602054-chr11:47624527..47627482,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM180B-2	chr11:47626130-47626648	NONHSAT021264

Variant related genes	Relation type
ENSG00000213619	Chromatin interaction
ENSG00000172247	Chromatin interaction
ENSG00000123444	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10838726	0.81[ASN][1000 genomes]
rs10838731	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11039290	0.80[ASN][1000 genomes]
rs11039297	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11039332	0.83[AMR][1000 genomes]
rs12365079	0.83[AMR][1000 genomes]
rs7120548	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71475921	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv825872	chr11:47565425-47660330	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10769282	FNBP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47607000-47632800	Weak transcription	Dnd41	blood
2	chr11:47616000-47628200	Weak transcription	Right Atrium	heart
3	chr11:47616400-47627000	Weak transcription	Pancreas	Pancrea
4	chr11:47616400-47628200	Weak transcription	HSMMtube	muscle
5	chr11:47616400-47628400	Weak transcription	Ovary	ovary
6	chr11:47616600-47631400	Weak transcription	Spleen	Spleen
7	chr11:47616600-47632400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:47616600-47632600	Weak transcription	Brain Substantia Nigra	brain
9	chr11:47617400-47628200	Weak transcription	Right Ventricle	heart
10	chr11:47617600-47643200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:47617800-47632400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr11:47618000-47628200	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:47618000-47639200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:47618400-47628200	Weak transcription	Fetal Intestine Small	intestine
15	chr11:47618400-47628600	Weak transcription	Liver	Liver
16	chr11:47619200-47627000	Weak transcription	Primary T cells from cord blood	blood
17	chr11:47619400-47631400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:47619600-47631400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:47619600-47631600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:47620600-47628200	Weak transcription	Thymus	Thymus
21	chr11:47620800-47637800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:47621000-47640400	Weak transcription	Fetal Brain Female	brain
23	chr11:47621200-47628800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:47621400-47628200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:47621600-47628400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:47621600-47628400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:47621600-47632400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr11:47621600-47638200	Weak transcription	Hela-S3	cervix
29	chr11:47621600-47647600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:47621800-47627600	Weak transcription	NHDF-Ad	bronchial
31	chr11:47621800-47628200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:47621800-47628600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr11:47621800-47629400	Weak transcription	Brain Anterior Caudate	brain
34	chr11:47621800-47631400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:47621800-47632200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr11:47621800-47642000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:47622000-47628200	Weak transcription	Adipose Nuclei	Adipose
38	chr11:47622000-47636000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:47622000-47637600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:47623000-47632800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:47623400-47627600	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr11:47623800-47632400	Weak transcription	Gastric	stomach
43	chr11:47624200-47628200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:47624200-47631400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr11:47624200-47632600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr11:47624400-47632400	Weak transcription	Fetal Thymus	thymus
47	chr11:47625000-47627600	Weak transcription	Osteobl	bone
48	chr11:47625000-47627800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr11:47625000-47628000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:47625000-47628200	Weak transcription	Muscle Satellite Cultured Cells	--

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