Variant report

Variant	rs10769283
Chromosome Location	chr11:47662132-47662133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47599184..47601918-chr11:47661794..47664226,4	MCF-7	breast:
2	chr11:47661932..47663606-chr11:47755819..47758646,2	K562	blood:
3	chr11:47660831..47663188-chr11:47962801..47965480,2	K562	blood:
4	chr11:47660743..47662346-chr11:47776631..47779336,2	MCF-7	breast:
5	chr11:47206285..47208872-chr11:47661768..47663771,2	K562	blood:
6	chr11:47661534..47663358-chr11:47740296..47742508,2	K562	blood:
7	chr11:47599811..47601701-chr11:47661212..47663329,2	K562	blood:
8	chr11:47599811..47601393-chr11:47661829..47664063,2	K562	blood:
9	chr11:47586161..47588765-chr11:47660200..47662976,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000165912	Chromatin interaction
ENSG00000123444	Chromatin interaction
ENSG00000149187	Chromatin interaction
ENSG00000213619	Chromatin interaction
ENSG00000110536	Chromatin interaction
ENSG00000231880	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10690121	1.00[AMR][1000 genomes]
rs10769279	1.00[AMR][1000 genomes]
rs10769281	1.00[AMR][1000 genomes]
rs10838735	1.00[AMR][1000 genomes]
rs11039309	1.00[AMR][1000 genomes]
rs11039312	1.00[AMR][1000 genomes]
rs11601397	1.00[ASN][1000 genomes]
rs2233354	1.00[AMR][1000 genomes]
rs4256934	1.00[AMR][1000 genomes]
rs4284367	1.00[AMR][1000 genomes]
rs4303193	1.00[AMR][1000 genomes]
rs4331047	1.00[AMR][1000 genomes]
rs4418760	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4434961	1.00[AMR][1000 genomes]
rs4486587	1.00[AMR][1000 genomes]
rs4623856	1.00[AMR][1000 genomes]
rs4752859	1.00[AMR][1000 genomes]
rs6416137	1.00[AMR][1000 genomes]
rs6485760	1.00[AMR][1000 genomes]
rs6485762	1.00[AMR][1000 genomes]
rs6485764	1.00[AMR][1000 genomes]
rs7103092	1.00[AMR][1000 genomes]
rs7105845	1.00[AMR][1000 genomes]
rs7106293	1.00[AMR][1000 genomes]
rs7107473	1.00[AMR][1000 genomes]
rs7109012	1.00[AMR][1000 genomes]
rs7118271	1.00[AMR][1000 genomes]
rs7129821	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
3	esv3424537	chr11:47660545-47663980	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47637600-47663200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:47639000-47662600	Weak transcription	Stomach Mucosa	stomach
3	chr11:47646800-47662600	Weak transcription	Aorta	Aorta
4	chr11:47648200-47662800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:47648200-47663200	Weak transcription	Gastric	stomach
6	chr11:47648400-47662800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:47649200-47662600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:47653400-47662600	Weak transcription	Psoas Muscle	Psoas
9	chr11:47653600-47662200	Weak transcription	Fetal Brain Male	brain
10	chr11:47653600-47662200	Weak transcription	Fetal Heart	heart
11	chr11:47653800-47662400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:47656000-47662600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:47656200-47662800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:47656800-47662800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:47657000-47662400	Weak transcription	Spleen	Spleen
16	chr11:47657000-47662600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:47657000-47663200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:47657000-47663200	Weak transcription	Esophagus	oesophagus
19	chr11:47657200-47662200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:47657200-47662400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr11:47657200-47662400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr11:47657200-47662800	Weak transcription	Colon Smooth Muscle	Colon
23	chr11:47657200-47663400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:47657800-47662400	Weak transcription	Right Ventricle	heart
25	chr11:47658600-47662600	Weak transcription	Colonic Mucosa	Colon
26	chr11:47658800-47663200	Weak transcription	Lung	lung
27	chr11:47659800-47662200	Weak transcription	Brain Germinal Matrix	brain
28	chr11:47659800-47662600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr11:47660000-47662400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:47660400-47662200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr11:47660400-47662200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:47660400-47662200	Genic enhancers	Dnd41	blood
33	chr11:47660400-47662400	Weak transcription	NHEK	skin
34	chr11:47660400-47662600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr11:47660600-47662200	Weak transcription	HSMMtube	muscle
36	chr11:47660600-47662400	Weak transcription	Fetal Lung	lung
37	chr11:47660600-47662400	Weak transcription	Left Ventricle	heart
38	chr11:47660600-47662400	Weak transcription	HMEC	breast
39	chr11:47660600-47662600	Weak transcription	NH-A	brain
40	chr11:47660800-47662200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr11:47660800-47662400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:47660800-47662600	Weak transcription	NHLF	lung
43	chr11:47660800-47662800	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr11:47661000-47662200	Weak transcription	Primary B cells from peripheral blood	blood
45	chr11:47661000-47662400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr11:47661000-47662400	Weak transcription	Primary B cells from cord blood	blood
47	chr11:47661000-47662400	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr11:47661000-47662400	Weak transcription	Brain Anterior Caudate	brain
49	chr11:47661000-47662800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:47661000-47662800	Weak transcription	Primary T cells from cord blood	blood

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