Variant report

Variant	rs10769301
Chromosome Location	chr11:47894905-47894906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10742819	0.89[AFR][1000 genomes]
rs10769293	0.89[AFR][1000 genomes]
rs10838756	0.89[AFR][1000 genomes]
rs10838781	0.91[AFR][1000 genomes]
rs10838785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039437	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1459988	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2869542	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4500446	0.98[AFR][1000 genomes]
rs4519055	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4752863	0.86[AFR][1000 genomes]
rs4752868	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6485790	0.91[AFR][1000 genomes]
rs6485791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7107116	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112381	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125276	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128206	0.82[AFR][1000 genomes]
rs7130715	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7936734	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
3	nsv1036992	chr11:47794621-48666024	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv1049835	chr11:47837089-47928822	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv541036	chr11:47837089-47928822	Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv897326	chr11:47891334-48035474	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47891800-47895000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:47891800-47895600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:47892800-47895000	Weak transcription	Primary B cells from cord blood	blood
4	chr11:47894000-47895200	Enhancers	Hela-S3	cervix

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