Variant report
| Variant | rs10772037 |
|---|---|
| Chromosome Location | chr12:33269846-33269847 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:33245520..33247527-chr12:33268044..33270867,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10047666 | 1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs10506104 | 0.85[EUR][1000 genomes] |
| rs10844471 | 0.91[EUR][1000 genomes] |
| rs10844474 | 0.91[EUR][1000 genomes] |
| rs10844480 | 0.85[EUR][1000 genomes] |
| rs10844491 | 0.83[EUR][1000 genomes] |
| rs11052501 | 0.83[EUR][1000 genomes] |
| rs11052502 | 0.83[EUR][1000 genomes] |
| rs11052526 | 0.81[EUR][1000 genomes] |
| rs12297690 | 1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs12311921 | 0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1392331 | 1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes] |
| rs1445311 | 0.85[EUR][1000 genomes] |
| rs1961179 | 0.83[EUR][1000 genomes] |
| rs1961180 | 0.83[EUR][1000 genomes] |
| rs59547881 | 0.83[EUR][1000 genomes] |
| rs72640193 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530421 | chr12:32825335-33465991 | Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv832367 | chr12:33063644-33298967 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1053849 | chr12:33132909-33279169 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1044931 | chr12:33179957-33307362 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1046565 | chr12:33252166-33294648 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv1035521 | chr12:33265578-33293907 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:33268200-33270400 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr12:33269400-33270400 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
