Variant report

Variant	rs10772354
Chromosome Location	chr12:10848156-10848157
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10459057	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10492348	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10772353	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10772356	0.86[ASN][1000 genomes]
rs10845205	0.86[AFR][1000 genomes]
rs10845206	0.84[AFR][1000 genomes]
rs10845207	0.81[AFR][1000 genomes]
rs11053909	0.84[AFR][1000 genomes]
rs11830560	0.81[AFR][1000 genomes]
rs11830873	0.81[AFR][1000 genomes]
rs11838144	0.81[AFR][1000 genomes]
rs12581589	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7958178	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7963875	0.83[AFR][1000 genomes]
rs7973160	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10772354	YBX3	cis	Muscle Skeletal	GTEx

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10834600-10853800	Weak transcription	Pancreas	Pancrea
2	chr12:10834800-10848600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:10836800-10851200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr12:10839800-10849800	Weak transcription	A549	lung
5	chr12:10840600-10848600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr12:10842000-10848600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr12:10842000-10848600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr12:10842000-10866000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr12:10842200-10849000	Weak transcription	HMEC	breast
10	chr12:10842200-10849200	Weak transcription	Colon Smooth Muscle	Colon
11	chr12:10842600-10848400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:10842800-10848600	Weak transcription	NHDF-Ad	bronchial
13	chr12:10842800-10850800	Weak transcription	Aorta	Aorta
14	chr12:10843000-10850800	Weak transcription	Ovary	ovary
15	chr12:10843000-10853600	Weak transcription	Right Ventricle	heart
16	chr12:10843200-10849200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr12:10843200-10849400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr12:10843400-10849800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr12:10843600-10849800	Weak transcription	Hela-S3	cervix
20	chr12:10844000-10848600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr12:10844000-10850600	Weak transcription	Fetal Muscle Leg	muscle
22	chr12:10844400-10848600	Weak transcription	Primary B cells from cord blood	blood
23	chr12:10844400-10848600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr12:10844600-10848800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr12:10844600-10849800	Weak transcription	HSMMtube	muscle
26	chr12:10844800-10848400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr12:10844800-10849200	Weak transcription	Liver	Liver
28	chr12:10845000-10848600	Weak transcription	Adipose Nuclei	Adipose
29	chr12:10845000-10849800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr12:10845200-10850000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr12:10845200-10850800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr12:10845200-10854400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr12:10845400-10849800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr12:10845600-10848800	Weak transcription	Placenta	Placenta
35	chr12:10845600-10849800	Weak transcription	NHEK	skin
36	chr12:10845600-10853800	Weak transcription	Fetal Intestine Small	intestine
37	chr12:10845800-10869400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr12:10846000-10849800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr12:10846400-10850800	Weak transcription	Fetal Stomach	stomach
40	chr12:10846400-10853600	Weak transcription	Lung	lung
41	chr12:10846400-10854200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr12:10846400-10862400	Weak transcription	Esophagus	oesophagus
43	chr12:10846400-10868200	Strong transcription	HUVEC	blood vessel
44	chr12:10846600-10848400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr12:10846600-10850000	Weak transcription	Fetal Lung	lung
46	chr12:10846800-10848600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr12:10846800-10848600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr12:10846800-10848600	Weak transcription	Osteobl	bone
49	chr12:10846800-10853200	Weak transcription	Small Intestine	intestine
50	chr12:10847000-10848600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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