Variant report
| Variant | rs10772362 |
|---|---|
| Chromosome Location | chr12:10952176-10952177 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:10951582..10953191-chr12:10954611..10956191,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000121377 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10743925 | 0.84[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10743926 | 0.84[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10845218 | 0.82[ASN][1000 genomes] |
| rs10845219 | 0.82[ASN][1000 genomes] |
| rs1548803 | 0.88[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1838344 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1838345 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2588350 | 1.00[CEU][hapmap];0.86[GIH][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes] |
| rs3906863 | 0.81[ASN][1000 genomes] |
| rs4262797 | 0.88[ASN][1000 genomes] |
| rs4763216 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049362 | chr12:10893573-11018850 | Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv898776 | chr12:10909412-11032045 | Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv1044642 | chr12:10910774-10954384 | Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:22)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10772362 | TAS2R9 | cis | parietal | SCAN |
| rs10772362 | TAS2R19 | cis | parietal | SCAN |
| rs10772362 | PRH1 | cis | cerebellum | SCAN |
| rs10772362 | TAS2R19 | cis | cerebellum | SCAN |
| rs10772362 | TAS2R31 | cis | parietal | SCAN |
| rs10772362 | TAS2R50 | cis | parietal | SCAN |
| rs10772362 | PRR4 | cis | Muscle Skeletal | GTEx |
| rs10772362 | PRR4 | cis | Thyroid | GTEx |
| rs10772362 | TAS2R14 | cis | parietal | SCAN |
| rs10772362 | TAS2R14 | cis | cerebellum | SCAN |
| rs10772362 | PRR4 | cis | lymphoblastoid | seeQTL |
| rs10772362 | TAS2R31 | cis | cerebellum | SCAN |
| rs10772362 | GPR162 | cis | parietal | SCAN |
| rs10772362 | TAS2R20 | cis | cerebellum | SCAN |
| rs10772362 | TAS2R46 | cis | cerebellum | SCAN |
| rs10772362 | TAS2R8 | cis | parietal | SCAN |
| rs10772362 | RP11-785H5.1 | cis | Thyroid | GTEx |
| rs10772362 | TAS2R50 | cis | cerebellum | SCAN |
| rs10772362 | TAS2R10 | cis | parietal | SCAN |
| rs10772362 | TAS2R13 | cis | cerebellum | SCAN |
| rs10772362 | PRR4 | cis | cerebellum | SCAN |
| rs10772362 | CLEC4D | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
