Variant report
| Variant | rs10772365 |
|---|---|
| Chromosome Location | chr12:10982898-10982899 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:10)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:10 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| TAS2R10 | TF binding region |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10743925 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10743926 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10845218 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10845219 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10845221 | 0.87[EUR][1000 genomes] |
| rs1548803 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1838346 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs3741845 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs3863320 | 0.83[EUR][1000 genomes] |
| rs3906863 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4262797 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4763216 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs615239 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs655046 | 0.83[EUR][1000 genomes] |
| rs689118 | 0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049362 | chr12:10893573-11018850 | Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv898776 | chr12:10909412-11032045 | Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | esv2758294 | chr12:10969620-11714921 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 52 gene(s) | inside rSNPs | diseases |
| 4 | esv2759879 | chr12:10969620-11714921 | Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 52 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:20)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10772365 | PRR4 | cis | lung | GTEx |
| rs10772365 | TAS2R20 | cis | Skin Sun Exposed Lower leg | GTEx |
| rs10772365 | PRR4 | cis | Muscle Skeletal | GTEx |
| rs10772365 | RP11-434C1.1 | cis | lung | GTEx |
| rs10772365 | RP11-434C1.1 | cis | Esophagus Muscularis | GTEx |
| rs10772365 | RP11-434C1.1 | cis | Adipose Subcutaneous | GTEx |
| rs10772365 | PRR4 | cis | Thyroid | GTEx |
| rs10772365 | PRR4 | cis | Artery Tibial | GTEx |
| rs10772365 | RP11-785H5.1 | cis | Thyroid | GTEx |
| rs10772365 | RP11-434C1.1 | cis | Artery Tibial | GTEx |
| rs10772365 | TAS2R14 | cis | Esophagus Mucosa | GTEx |
| rs10772365 | TAS2R14 | cis | Esophagus Muscularis | GTEx |
| rs10772365 | RP11-434C1.1 | cis | Muscle Skeletal | GTEx |
| rs10772365 | PRR4 | cis | Heart Left Ventricle | GTEx |
| rs10772365 | RP11-434C1.1 | cis | Thyroid | GTEx |
| rs10772365 | PRR4 | cis | Adipose Subcutaneous | GTEx |
| rs10772365 | RP11-785H5.1 | cis | Skin Sun Exposed Lower leg | GTEx |
| rs10772365 | PRR4 | cis | Esophagus Muscularis | GTEx |
| rs10772365 | TAS2R14 | cis | Nerve Tibial | GTEx |
| rs10772365 | TAS2R14 | cis | Artery Tibial | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:10973600-11009600 | Weak transcription | HSMM | muscle |
