Variant report

Variant	rs10776575
Chromosome Location	chr10:50662422-50662423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50660820..50663158-chr10:50667419..50669518,2	K562	blood:
2	chr10:50661658..50664065-chr10:50667787..50669518,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10857497	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10857504	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10857506	0.85[EUR][1000 genomes]
rs10857510	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11101144	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11101155	0.85[EUR][1000 genomes]
rs11591393	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12146288	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1917821	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2177819	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2229760	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2281792	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2281793	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2377900	0.85[EUR][1000 genomes]
rs3750747	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3793784	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4253038	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4253160	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4253190	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4253234	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7895633	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7898545	0.81[EUR][1000 genomes]
rs9988727	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895377	chr10:50588990-50678212	ZNF genes & repeats Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50638400-50665800	Weak transcription	Gastric	stomach
2	chr10:50649600-50665600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:50656600-50672600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:50658400-50663600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr10:50659400-50665000	Weak transcription	Thymus	Thymus
6	chr10:50660000-50663800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:50660000-50666800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:50660400-50662800	Weak transcription	HMEC	breast
9	chr10:50660400-50663400	Weak transcription	HUVEC	blood vessel
10	chr10:50660400-50663600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:50660400-50663800	Weak transcription	NHEK	skin
12	chr10:50660400-50672400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:50660600-50662600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:50661000-50663800	Weak transcription	Fetal Kidney	kidney
15	chr10:50661000-50664400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:50661200-50662600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:50661400-50662600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:50661400-50663600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:50661800-50662600	ZNF genes & repeats	Fetal Lung	lung
20	chr10:50661800-50662600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
21	chr10:50661800-50663000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:50661800-50663600	ZNF genes & repeats	Liver	Liver
23	chr10:50661800-50665000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
24	chr10:50662000-50662600	Strong transcription	Rectal Smooth Muscle	rectum
25	chr10:50662000-50662600	ZNF genes & repeats	Dnd41	blood
26	chr10:50662000-50662800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:50662000-50662800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
28	chr10:50662000-50662800	ZNF genes & repeats	Brain Angular Gyrus	brain
29	chr10:50662000-50662800	ZNF genes & repeats	Fetal Intestine Large	intestine
30	chr10:50662000-50662800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
31	chr10:50662000-50663000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:50662000-50663000	ZNF genes & repeats	Adipose Nuclei	Adipose
33	chr10:50662000-50663000	ZNF genes & repeats	Colon Smooth Muscle	Colon
34	chr10:50662000-50663800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
35	chr10:50662000-50664400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
36	chr10:50662000-50665000	Strong transcription	HSMM	muscle
37	chr10:50662000-50669800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:50662200-50662600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:50662200-50662600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
40	chr10:50662200-50662600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
41	chr10:50662200-50662600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
42	chr10:50662200-50662600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
43	chr10:50662200-50662600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr10:50662200-50662600	ZNF genes & repeats	Brain Anterior Caudate	brain
45	chr10:50662200-50662600	ZNF genes & repeats	Brain Germinal Matrix	brain
46	chr10:50662200-50662600	ZNF genes & repeats	Brain Hippocampus Middle	brain
47	chr10:50662200-50662600	ZNF genes & repeats	Brain Substantia Nigra	brain
48	chr10:50662200-50662600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
49	chr10:50662200-50662600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
50	chr10:50662200-50662600	ZNF genes & repeats	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links