Variant report

Variant	rs10776577
Chromosome Location	chr10:50742353-50742354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50737860..50742863-chr10:50744224..50749108,7	MCF-7	breast:
2	chr10:50736437..50738904-chr10:50740904..50743447,2	MCF-7	breast:
3	chr10:50735627..50740357-chr10:50740401..50744451,4	K562	blood:

Variant related genes	Relation type
ENSG00000225830	Chromatin interaction
ENSG00000258838	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1018603	1.00[ASN][1000 genomes]
rs10745261	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10776572	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10776573	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10857502	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101147	1.00[ASN][1000 genomes]
rs1475255	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1917800	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924490	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1924492	1.00[ASN][1000 genomes]
rs2103201	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104346	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4240509	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4253026	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4253073	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4253077	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4253087	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4253120	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4253132	1.00[ASN][1000 genomes]
rs4253162	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4253164	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4253179	1.00[ASN][1000 genomes]
rs4838523	1.00[ASN][1000 genomes]
rs4838524	1.00[ASN][1000 genomes]
rs4838530	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57509152	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537536	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6537538	1.00[ASN][1000 genomes]
rs7072383	0.91[EUR][1000 genomes]
rs7076173	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7080017	1.00[ASN][1000 genomes]
rs7091005	1.00[ASN][1000 genomes]
rs72792895	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72793798	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902661	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903788	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7903930	1.00[ASN][1000 genomes]
rs7916873	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923762	1.00[ASN][1000 genomes]
rs912470	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958967	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50717200-50746000	Weak transcription	Fetal Heart	heart
2	chr10:50720400-50746200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:50725000-50746200	Weak transcription	Psoas Muscle	Psoas
4	chr10:50729000-50745800	Weak transcription	Stomach Mucosa	stomach
5	chr10:50729200-50742400	Strong transcription	Hela-S3	cervix
6	chr10:50730000-50746400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:50731600-50746200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:50731800-50745800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:50732400-50746000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:50732600-50746000	Weak transcription	Small Intestine	intestine
11	chr10:50733600-50746000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:50735600-50746200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:50736000-50746000	Weak transcription	A549	lung
14	chr10:50736600-50746000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:50737400-50744600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr10:50737600-50744400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:50738200-50745800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr10:50738400-50745800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:50738400-50745800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr10:50739600-50746200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:50740600-50742400	Weak transcription	NH-A	brain
22	chr10:50740600-50745800	Weak transcription	Primary B cells from cord blood	blood
23	chr10:50740600-50746200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr10:50740800-50742400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:50740800-50742400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr10:50740800-50742400	Weak transcription	NHDF-Ad	bronchial
27	chr10:50740800-50742600	Weak transcription	NHLF	lung
28	chr10:50740800-50742800	Weak transcription	Brain Germinal Matrix	brain
29	chr10:50740800-50743000	Weak transcription	Brain Angular Gyrus	brain
30	chr10:50740800-50744600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:50740800-50744600	Weak transcription	Brain Substantia Nigra	brain
32	chr10:50740800-50745600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr10:50740800-50745600	Weak transcription	Fetal Brain Male	brain
34	chr10:50740800-50745800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr10:50740800-50745800	Weak transcription	Fetal Lung	lung
36	chr10:50740800-50746000	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr10:50740800-50746000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:50740800-50746000	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:50740800-50746000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:50740800-50746000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr10:50740800-50746200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:50740800-50746200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr10:50740800-50746200	Weak transcription	Fetal Kidney	kidney
44	chr10:50741000-50742400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:50741000-50742400	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr10:50741000-50742600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr10:50741000-50742600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:50741000-50742800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr10:50741000-50742800	Weak transcription	Right Atrium	heart
50	chr10:50741000-50742800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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