Variant report

Variant	rs10776968
Chromosome Location	chr12:86766765-86766766
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10745408	0.92[EUR][1000 genomes]
rs10745416	0.87[AMR][1000 genomes]
rs10776955	0.92[EUR][1000 genomes]
rs10776957	0.92[EUR][1000 genomes]
rs10776959	0.93[EUR][1000 genomes]
rs10776961	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10776966	0.95[EUR][1000 genomes]
rs10776976	0.90[AMR][1000 genomes]
rs10776977	0.90[AMR][1000 genomes]
rs10858419	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12582690	0.82[ASN][1000 genomes]
rs1463749	0.88[EUR][1000 genomes]
rs1493415	0.89[EUR][1000 genomes]
rs1493416	0.88[EUR][1000 genomes]
rs1532262	0.82[EUR][1000 genomes]
rs1552839	0.82[EUR][1000 genomes]
rs1602848	0.81[EUR][1000 genomes]
rs1602850	0.88[EUR][1000 genomes]
rs1689357	0.85[EUR][1000 genomes]
rs1698787	0.85[EUR][1000 genomes]
rs1922742	0.94[AMR][1000 genomes]
rs1948448	0.89[EUR][1000 genomes]
rs1955399	0.87[AMR][1000 genomes]
rs2131565	0.82[EUR][1000 genomes]
rs2405930	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2406115	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2406116	0.92[EUR][1000 genomes]
rs2406117	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2406118	0.92[EUR][1000 genomes]
rs2406119	0.92[EUR][1000 genomes]
rs2406122	0.92[EUR][1000 genomes]
rs2406123	0.92[EUR][1000 genomes]
rs2452806	0.88[EUR][1000 genomes]
rs2452807	0.89[EUR][1000 genomes]
rs2452811	0.81[EUR][1000 genomes]
rs2452815	0.82[EUR][1000 genomes]
rs2465143	0.89[EUR][1000 genomes]
rs2465144	0.89[EUR][1000 genomes]
rs2465146	0.89[EUR][1000 genomes]
rs2465147	0.90[EUR][1000 genomes]
rs2471560	0.81[EUR][1000 genomes]
rs2471568	0.89[EUR][1000 genomes]
rs2471569	0.89[EUR][1000 genomes]
rs2471570	0.88[EUR][1000 genomes]
rs2897278	0.93[EUR][1000 genomes]
rs4265650	0.94[EUR][1000 genomes]
rs4334094	0.92[EUR][1000 genomes]
rs4503614	0.92[EUR][1000 genomes]
rs4628748	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4842483	0.95[EUR][1000 genomes]
rs6538031	0.93[EUR][1000 genomes]
rs6538032	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6538038	0.81[EUR][1000 genomes]
rs7134946	0.88[EUR][1000 genomes]
rs7135177	0.92[EUR][1000 genomes]
rs7135733	0.92[EUR][1000 genomes]
rs7135741	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7137308	0.88[EUR][1000 genomes]
rs7303796	0.90[AMR][1000 genomes]
rs7310186	0.94[EUR][1000 genomes]
rs7972484	0.95[EUR][1000 genomes]
rs7977689	0.86[AMR][1000 genomes]
rs839163	0.81[EUR][1000 genomes]
rs839164	0.81[EUR][1000 genomes]
rs839168	0.81[EUR][1000 genomes]
rs9919783	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9919793	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1053234	chr12:86701070-86774957	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1041126	chr12:86736601-86774957	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv1051494	chr12:86736601-86776021	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86761400-86769600	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links