Variant report

Variant	rs10776969
Chromosome Location	chr12:86781460-86781461
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10431399	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs10735250	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs10745407	0.96[CEU][hapmap];0.85[JPT][hapmap]
rs10745408	0.96[CEU][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10745416	0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs10745419	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs10776955	0.96[CEU][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes]
rs10776957	0.94[EUR][1000 genomes]
rs10776959	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10776961	1.00[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10776966	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10776968	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10776971	0.88[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap]
rs10776976	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10776977	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10858408	0.96[CEU][hapmap];0.85[JPT][hapmap]
rs10858412	0.95[JPT][hapmap]
rs10858419	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10858425	0.88[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs10858427	0.89[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs10858428	0.89[CEU][hapmap];0.81[YRI][hapmap]
rs10858444	0.83[JPT][hapmap]
rs11103983	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs12317113	0.88[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs12578669	0.89[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs12582690	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1463749	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1493415	0.90[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs1493416	0.90[EUR][1000 genomes]
rs1532262	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs1552839	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs1602848	0.83[EUR][1000 genomes]
rs1602850	0.90[EUR][1000 genomes]
rs1689357	0.87[EUR][1000 genomes]
rs1698787	0.92[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs1922742	0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1922749	0.92[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs1948448	0.92[EUR][1000 genomes]
rs1955399	0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes]
rs2091818	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs2131565	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs2405923	0.92[CEU][hapmap];0.87[YRI][hapmap]
rs2405925	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs2405928	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs2405930	0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2405933	0.82[EUR][1000 genomes]
rs2406115	0.96[CEU][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2406116	0.96[CEU][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes]
rs2406117	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2406118	0.96[CEU][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2406119	0.94[EUR][1000 genomes]
rs2406122	0.96[CEU][hapmap];0.84[JPT][hapmap];0.94[EUR][1000 genomes]
rs2406123	0.96[CEU][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes]
rs2406127	0.96[CEU][hapmap];0.85[JPT][hapmap]
rs2406128	0.84[JPT][hapmap]
rs2406160	0.85[JPT][hapmap];0.87[YRI][hapmap]
rs2452806	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2452807	0.92[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes]
rs2452811	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs2452815	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2465143	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs2465144	0.92[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes]
rs2465146	0.91[EUR][1000 genomes]
rs2465147	0.92[EUR][1000 genomes]
rs2465149	0.89[CEU][hapmap]
rs2471560	0.88[CEU][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs2471564	0.89[CEU][hapmap]
rs2471568	0.92[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs2471569	0.92[CEU][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes]
rs2471570	0.90[EUR][1000 genomes]
rs2897278	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs2897280	0.96[CEU][hapmap];0.95[JPT][hapmap]
rs4265650	0.95[CEU][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4334094	0.94[EUR][1000 genomes]
rs4370997	0.85[JPT][hapmap];0.87[YRI][hapmap]
rs4503614	0.94[EUR][1000 genomes]
rs4628748	1.00[CEU][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4842483	0.95[CEU][hapmap];0.98[EUR][1000 genomes]
rs6538025	0.88[CEU][hapmap];0.84[JPT][hapmap]
rs6538028	0.88[CEU][hapmap]
rs6538029	0.96[CEU][hapmap];0.85[JPT][hapmap]
rs6538031	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6538032	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6538033	0.96[CEU][hapmap];0.95[JPT][hapmap]
rs6538038	0.80[EUR][1000 genomes]
rs6538042	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs7134946	0.88[EUR][1000 genomes]
rs7135177	0.96[CEU][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7135733	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7135741	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7137308	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs7139324	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7299319	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs7303796	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7310186	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7953196	0.96[CEU][hapmap];0.89[JPT][hapmap]
rs7957560	0.96[CEU][hapmap];0.90[JPT][hapmap]
rs7963659	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs7964553	0.96[CEU][hapmap];0.85[JPT][hapmap]
rs7972484	0.96[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7973543	0.82[YRI][hapmap]
rs7973773	0.96[CEU][hapmap];0.85[JPT][hapmap]
rs7977689	0.95[JPT][hapmap];0.86[AMR][1000 genomes]
rs839104	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs839105	0.82[CEU][hapmap]
rs839148	0.88[CEU][hapmap];0.84[JPT][hapmap]
rs839149	0.85[JPT][hapmap]
rs839150	0.82[JPT][hapmap]
rs839151	0.84[JPT][hapmap]
rs839152	0.87[JPT][hapmap]
rs839153	0.85[JPT][hapmap]
rs839156	0.85[JPT][hapmap]
rs839157	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs839158	0.84[JPT][hapmap]
rs839159	0.92[CEU][hapmap];0.85[JPT][hapmap]
rs839163	0.83[EUR][1000 genomes]
rs839164	0.83[EUR][1000 genomes]
rs839165	0.88[CEU][hapmap];0.84[JPT][hapmap]
rs839166	0.85[JPT][hapmap]
rs839168	0.92[CEU][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs839170	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs839171	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs844434	0.84[JPT][hapmap]
rs844435	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs863395	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs865138	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs865721	0.84[JPT][hapmap]
rs9919783	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9919793	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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