Variant report

Variant	rs10776977
Chromosome Location	chr12:86862175-86862176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10431399	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10735250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10745407	0.84[JPT][hapmap]
rs10745408	0.83[JPT][hapmap]
rs10745416	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10745419	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10776955	0.83[JPT][hapmap]
rs10776961	0.94[JPT][hapmap]
rs10776968	0.90[AMR][1000 genomes]
rs10776969	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10776971	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10776976	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10858408	0.84[JPT][hapmap]
rs10858412	0.94[JPT][hapmap]
rs10858419	0.92[AMR][1000 genomes]
rs10858425	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10858427	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10858428	0.83[CHB][hapmap]
rs10858444	0.82[JPT][hapmap]
rs11103983	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12317113	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12578669	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12582690	0.94[JPT][hapmap]
rs1922742	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1922749	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1955399	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2091818	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2405925	0.94[JPT][hapmap]
rs2405928	0.94[JPT][hapmap]
rs2405930	0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs2406115	0.94[JPT][hapmap]
rs2406116	0.83[JPT][hapmap]
rs2406118	0.83[JPT][hapmap]
rs2406122	0.83[JPT][hapmap]
rs2406123	0.84[JPT][hapmap]
rs2406127	0.84[JPT][hapmap]
rs2406128	0.83[JPT][hapmap]
rs2406160	0.86[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap]
rs2897280	0.94[JPT][hapmap]
rs4265650	0.89[JPT][hapmap]
rs4370997	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs4628748	0.94[JPT][hapmap];0.82[AMR][1000 genomes]
rs6538029	0.84[JPT][hapmap]
rs6538033	0.94[JPT][hapmap]
rs6538042	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7135177	0.83[JPT][hapmap]
rs7139324	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7299319	0.94[JPT][hapmap]
rs7303796	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7953196	0.88[JPT][hapmap]
rs7957560	0.89[JPT][hapmap]
rs7963659	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7964553	0.84[JPT][hapmap]
rs7972484	0.89[JPT][hapmap]
rs7973773	0.84[JPT][hapmap]
rs7977689	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86859000-86862400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:86861200-86867000	Weak transcription	Fetal Lung	lung

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