Variant report

Variant	rs10780678
Chromosome Location	chr9:72459567-72459568
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1004487	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10123781	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1027287	0.81[AMR][1000 genomes]
rs10283871	0.82[ASN][1000 genomes]
rs10868150	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140334	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11140360	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11140362	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11140368	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11140527	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11140621	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11140682	0.90[EUR][1000 genomes]
rs11140722	0.92[EUR][1000 genomes]
rs11140741	0.87[EUR][1000 genomes]
rs11791776	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11792259	0.87[EUR][1000 genomes]
rs11793213	0.80[EUR][1000 genomes]
rs11793793	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12235751	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17085361	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2150048	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2183380	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2282070	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3739777	0.80[EUR][1000 genomes]
rs3949763	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4458931	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744940	0.82[EUR][1000 genomes]
rs4744941	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55881994	0.92[EUR][1000 genomes]
rs60429826	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7023103	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72723210	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72723211	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7869694	0.92[EUR][1000 genomes]
rs9792493	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72441600-72467200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:72442800-72480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:72449000-72467200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:72456600-72461600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:72457600-72472000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:72459400-72467400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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