Variant report

Variant	rs10780955
Chromosome Location	chr9:71079815-71079816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10116868	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10511957	1.00[CEU][hapmap]
rs10780960	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10780963	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs10780967	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10868817	0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10868826	0.89[CHB][hapmap]
rs10868852	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs10868877	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs10868879	0.82[CEU][hapmap]
rs10868922	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10868984	1.00[CEU][hapmap]
rs11142391	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11142449	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11142461	1.00[JPT][hapmap]
rs11142499	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11142500	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11142541	1.00[ASN][1000 genomes]
rs11142549	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs11142616	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11789244	0.82[CEU][hapmap]
rs11794424	1.00[CEU][hapmap]
rs12000789	0.82[CEU][hapmap]
rs12238439	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12343961	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12343980	1.00[EUR][1000 genomes]
rs12350942	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439981	0.86[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1353010	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17053702	1.00[CEU][hapmap]
rs17054803	1.00[CEU][hapmap]
rs17059173	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs265083	0.82[CEU][hapmap]
rs28510448	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35011246	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4237244	0.81[EUR][1000 genomes]
rs4237245	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs59478866	0.80[ASN][1000 genomes]
rs7019238	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7021955	1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7026163	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7039149	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7042123	0.82[CEU][hapmap]
rs7042601	0.95[EUR][1000 genomes]
rs7855134	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7866604	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7875408	0.89[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
2	chr9:71065800-71080000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:71070200-71087000	Weak transcription	Aorta	Aorta
4	chr9:71070800-71100800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:71075200-71098800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:71076400-71098800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:71077400-71087000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:71077600-71098800	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:71077800-71081200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr9:71077800-71103400	Weak transcription	Right Ventricle	heart
11	chr9:71078000-71080000	Weak transcription	Fetal Kidney	kidney
12	chr9:71078200-71084400	Weak transcription	Fetal Heart	heart
13	chr9:71078200-71103400	Weak transcription	HSMMtube	muscle
14	chr9:71078400-71081600	Strong transcription	Colon Smooth Muscle	Colon
15	chr9:71078400-71082000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:71078400-71084400	Weak transcription	Ovary	ovary
17	chr9:71078400-71087000	Weak transcription	Fetal Stomach	stomach
18	chr9:71078800-71080000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:71078800-71080200	Genic enhancers	Fetal Lung	lung
20	chr9:71079200-71080600	Strong transcription	Left Ventricle	heart
21	chr9:71079400-71080200	Enhancers	Right Atrium	heart
22	chr9:71079400-71081200	Strong transcription	Stomach Smooth Muscle	stomach

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