Variant report

Variant	rs10780967
Chromosome Location	chr9:71092235-71092236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10116868	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10511957	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs10511958	0.85[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.89[ASN][1000 genomes]
rs10735596	0.82[JPT][hapmap]
rs10780955	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10780962	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10780963	0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10781002	0.90[GIH][hapmap]
rs10868795	0.82[JPT][hapmap]
rs10868796	0.82[JPT][hapmap]
rs10868803	0.81[JPT][hapmap]
rs10868804	0.82[JPT][hapmap]
rs10868851	0.80[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs10868852	1.00[ASW][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10868876	0.83[ASN][1000 genomes]
rs10868877	1.00[ASW][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10868879	0.82[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs10868922	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10868984	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs11142075	0.82[JPT][hapmap]
rs11142199	0.82[JPT][hapmap]
rs11142305	0.82[JPT][hapmap]
rs11142391	1.00[GIH][hapmap]
rs11142449	1.00[GIH][hapmap]
rs11142461	1.00[GIH][hapmap]
rs11142500	0.95[GIH][hapmap]
rs11142543	0.89[ASN][1000 genomes]
rs11142549	0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11142616	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11142650	0.91[JPT][hapmap]
rs11789244	0.82[CEU][hapmap]
rs11794424	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs12000789	0.82[CEU][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12238439	0.82[CEU][hapmap];0.91[GIH][hapmap];0.81[EUR][1000 genomes]
rs12343961	0.95[EUR][1000 genomes]
rs12343980	0.95[EUR][1000 genomes]
rs12350942	0.95[EUR][1000 genomes]
rs12353500	0.88[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs13439981	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1353009	0.85[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1353010	0.82[CEU][hapmap]
rs1492823	0.82[JPT][hapmap]
rs1492824	0.82[JPT][hapmap]
rs17053702	1.00[CEU][hapmap]
rs17054803	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs17056009	0.91[JPT][hapmap]
rs17059173	1.00[CEU][hapmap]
rs1887889	0.82[JPT][hapmap]
rs2026033	0.82[JPT][hapmap]
rs2026034	0.82[JPT][hapmap]
rs265072	0.82[AMR][1000 genomes]
rs265083	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs28510448	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35011246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4237244	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237245	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744594	0.91[JPT][hapmap]
rs4745041	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[ASN][1000 genomes]
rs6560144	0.81[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7019238	0.95[GIH][hapmap]
rs7020465	0.82[JPT][hapmap]
rs7021955	0.88[YRI][hapmap];0.89[AFR][1000 genomes]
rs7022220	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs7022394	0.80[ASN][1000 genomes]
rs7025140	0.82[JPT][hapmap]
rs7026163	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7030076	0.86[ASN][1000 genomes]
rs7031619	0.83[ASN][1000 genomes]
rs7035038	0.92[ASN][1000 genomes]
rs7039149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039686	0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7042123	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7042601	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7042721	0.98[ASN][1000 genomes]
rs7855134	0.91[GIH][hapmap]
rs7866604	1.00[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71070800-71100800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:71075200-71098800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:71076400-71098800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:71077600-71098800	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:71077800-71103400	Weak transcription	Right Ventricle	heart
6	chr9:71078200-71103400	Weak transcription	HSMMtube	muscle
7	chr9:71081000-71098800	Weak transcription	Fetal Kidney	kidney
8	chr9:71087400-71107200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:71089800-71097000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:71090600-71093000	Enhancers	Stomach Smooth Muscle	stomach
11	chr9:71090600-71093600	Enhancers	Rectal Smooth Muscle	rectum
12	chr9:71090600-71094000	Enhancers	Colon Smooth Muscle	Colon
13	chr9:71091200-71092600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr9:71091200-71095000	Weak transcription	Left Ventricle	heart
15	chr9:71091400-71092400	Enhancers	Ovary	ovary
16	chr9:71091400-71093800	Enhancers	Fetal Stomach	stomach
17	chr9:71092000-71092600	Enhancers	Right Atrium	heart
18	chr9:71092000-71093800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:71092000-71093800	Enhancers	Aorta	Aorta
20	chr9:71092000-71101400	Weak transcription	Fetal Heart	heart
21	chr9:71092200-71095800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:71092200-71095800	Weak transcription	Fetal Lung	lung
23	chr9:71092200-71115400	Weak transcription	Psoas Muscle	Psoas

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