Variant report

Variant	rs10780986
Chromosome Location	chr9:71123747-71123748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71121474..71124177-chr9:71138175..71140429,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10781002	0.86[JPT][hapmap];0.84[LWK][hapmap]
rs10868961	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10868984	0.80[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10869001	0.81[GIH][hapmap];0.86[JPT][hapmap]
rs11142697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11788769	0.88[ASN][1000 genomes]
rs12375820	1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs2131355	0.90[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs265072	0.80[EUR][1000 genomes]
rs265073	0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs265076	0.92[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs265077	0.86[EUR][1000 genomes]
rs265078	0.89[EUR][1000 genomes]
rs265079	0.89[EUR][1000 genomes]
rs265083	0.85[CHD][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs265087	0.86[JPT][hapmap];0.89[MEX][hapmap]
rs404994	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7034863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7861495	1.00[CEU][hapmap];0.92[GIH][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71116200-71124000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:71117000-71129600	Weak transcription	NHLF	lung
3	chr9:71117600-71142800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:71120200-71124600	Enhancers	Rectal Smooth Muscle	rectum
5	chr9:71120600-71124200	Enhancers	Liver	Liver
6	chr9:71120800-71130200	Weak transcription	Aorta	Aorta
7	chr9:71121000-71124000	Enhancers	Fetal Kidney	kidney
8	chr9:71121000-71124400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr9:71121000-71129000	Weak transcription	Psoas Muscle	Psoas
10	chr9:71121000-71129600	Weak transcription	Fetal Intestine Large	intestine
11	chr9:71121200-71128400	Weak transcription	Right Ventricle	heart
12	chr9:71121200-71129800	Weak transcription	Fetal Intestine Small	intestine
13	chr9:71121800-71124800	Enhancers	Colon Smooth Muscle	Colon
14	chr9:71122200-71133200	Weak transcription	Ovary	ovary
15	chr9:71122400-71132000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:71122600-71124000	Enhancers	Stomach Mucosa	stomach
17	chr9:71122600-71124600	Enhancers	K562	blood
18	chr9:71122600-71132400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:71122800-71124200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:71122800-71124200	Enhancers	Right Atrium	heart
21	chr9:71122800-71124400	Enhancers	Fetal Lung	lung
22	chr9:71123000-71124000	Weak transcription	Fetal Muscle Leg	muscle
23	chr9:71123000-71124400	Enhancers	HepG2	liver
24	chr9:71123000-71128200	Weak transcription	Fetal Heart	heart
25	chr9:71123200-71128400	Weak transcription	Left Ventricle	heart
26	chr9:71123200-71129000	Weak transcription	Placenta	Placenta
27	chr9:71123200-71129600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr9:71123200-71130000	Weak transcription	HSMMtube	muscle
29	chr9:71123400-71124800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:71123400-71125000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:71123600-71123800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:71123600-71124200	Genic enhancers	Fetal Stomach	stomach
33	chr9:71123600-71124200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr9:71123600-71124400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
35	chr9:71123600-71125000	Genic enhancers	Stomach Smooth Muscle	stomach

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