Variant report

Variant	rs10782302
Chromosome Location	chr6:100993125-100993126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10457808	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10457809	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs108422	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11155496	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11155498	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12190903	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12191199	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12192249	0.84[AMR][1000 genomes]
rs12200565	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12206182	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12206564	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12206945	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12374612	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12660725	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs151638	0.82[AMR][1000 genomes]
rs151640	0.81[ASN][1000 genomes]
rs17303769	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1875400	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1875401	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2001102	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2062634	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2062635	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs239234	0.82[AMR][1000 genomes]
rs239236	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2398132	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs240111	0.85[ASN][1000 genomes]
rs240115	0.85[AMR][1000 genomes]
rs240149	0.82[ASN][1000 genomes]
rs240151	0.82[ASN][1000 genomes]
rs240152	0.82[ASN][1000 genomes]
rs240164	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs395521	0.85[AMR][1000 genomes]
rs4329121	0.82[ASN][1000 genomes]
rs4461738	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs454747	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62422675	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7356804	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv886444	chr6:100961198-101084946	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv604263	chr6:100980874-101078718	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv981170	chr6:100988799-100994802	Weak transcription Strong transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100952800-100997400	Weak transcription	A549	lung
2	chr6:100960800-101035000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:100961000-100997200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:100964200-101020000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:100964800-100998400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:100965200-101000800	Weak transcription	Fetal Intestine Small	intestine
7	chr6:100965200-101011400	Weak transcription	Pancreas	Pancrea
8	chr6:100965400-101005000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:100965600-101033600	Weak transcription	Ovary	ovary
10	chr6:100966000-101002400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:100966200-100996800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:100978200-101008200	Weak transcription	NHDF-Ad	bronchial
13	chr6:100978600-101019400	Weak transcription	HMEC	breast
14	chr6:100979800-101018200	Weak transcription	Primary T cells from cord blood	blood
15	chr6:100981800-101001400	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:100984800-101000400	Weak transcription	HepG2	liver
17	chr6:100986400-101005600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:100987600-100997000	Weak transcription	HSMM	muscle
19	chr6:100988000-101019000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:100988200-100995000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:100988200-100997200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:100988200-100997200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:100988200-100997200	Weak transcription	Osteobl	bone
24	chr6:100988200-100998400	Weak transcription	HUVEC	blood vessel
25	chr6:100988200-101001800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:100988200-101018800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:100988200-101035000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:100988200-101035000	Weak transcription	GM12878-XiMat	blood
29	chr6:100988400-100997000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:100988400-101005000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr6:100988800-100994600	Weak transcription	Placenta	Placenta
32	chr6:100988800-101008400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:100988800-101034200	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr6:100989000-101018400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:100989400-100996600	Weak transcription	Primary B cells from cord blood	blood
36	chr6:100989600-100996400	Weak transcription	Dnd41	blood
37	chr6:100990600-101018200	Weak transcription	Left Ventricle	heart

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