Variant report

Variant	rs10783381
Chromosome Location	chr12:51016450-51016451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:51014624..51017594-chr12:51125519..51128159,2	MCF-7	breast:
2	chr12:51011614..51015432-chr12:51015649..51019939,6	MCF-7	breast:
3	chr12:51010106..51013321-chr12:51014428..51017771,4	K562	blood:
4	chr12:51015875..51020257-chr12:51020735..51026058,6	MCF-7	breast:
5	chr12:51008977..51011248-chr12:51015762..51017787,2	MCF-7	breast:
6	chr12:51011830..51013610-chr12:51014850..51017833,2	MCF-7	breast:
7	chr12:50925165..50930036-chr12:51011670..51016786,5	MCF-7	breast:

Extended variants
information (count: 115 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1003033	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10431486	0.92[EUR][1000 genomes]
rs10431535	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10444547	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10459233	0.89[EUR][1000 genomes]
rs10459234	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10459235	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10506294	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10506295	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10747584	0.89[EUR][1000 genomes]
rs10747585	0.92[EUR][1000 genomes]
rs10747587	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10783369	0.91[EUR][1000 genomes]
rs10783370	0.92[EUR][1000 genomes]
rs10783371	0.92[EUR][1000 genomes]
rs10783372	0.92[EUR][1000 genomes]
rs10783373	0.91[EUR][1000 genomes]
rs10783374	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10783378	0.92[EUR][1000 genomes]
rs10783382	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10783383	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10783384	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10876042	0.88[EUR][1000 genomes]
rs10876043	0.89[EUR][1000 genomes]
rs10876047	0.92[EUR][1000 genomes]
rs10876051	0.91[EUR][1000 genomes]
rs10876052	0.91[EUR][1000 genomes]
rs10876053	0.92[EUR][1000 genomes]
rs10876056	0.91[EUR][1000 genomes]
rs10876058	0.92[EUR][1000 genomes]
rs10876060	0.90[EUR][1000 genomes]
rs10876061	0.92[EUR][1000 genomes]
rs10876063	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10876065	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10876067	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10876068	0.86[AMR][1000 genomes]
rs10876070	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10876071	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10876072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10876073	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10876075	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10876076	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11169479	0.92[EUR][1000 genomes]
rs11169480	0.92[EUR][1000 genomes]
rs11169481	0.91[EUR][1000 genomes]
rs11169483	0.87[EUR][1000 genomes]
rs11169487	0.92[EUR][1000 genomes]
rs11169493	0.91[EUR][1000 genomes]
rs11169498	0.89[EUR][1000 genomes]
rs11169505	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11169507	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169515	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11169528	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11169532	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11169537	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11169538	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11169539	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11613488	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11615933	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12230242	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12231309	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12231317	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12580051	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12580479	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12582712	0.92[EUR][1000 genomes]
rs12809086	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12827022	0.89[EUR][1000 genomes]
rs17124930	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2243571	0.84[EUR][1000 genomes]
rs2684908	0.81[EUR][1000 genomes]
rs2700478	0.86[EUR][1000 genomes]
rs34867510	0.88[EUR][1000 genomes]
rs35845404	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3742063	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3742064	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3825402	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3893353	0.92[EUR][1000 genomes]
rs3935869	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4131769	0.92[EUR][1000 genomes]
rs4238106	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4238107	1.00[ASN][1000 genomes]
rs4238108	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4516034	0.92[EUR][1000 genomes]
rs4768850	0.92[EUR][1000 genomes]
rs4768852	0.91[EUR][1000 genomes]
rs4768853	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4768858	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4768884	0.92[EUR][1000 genomes]
rs4768888	0.92[EUR][1000 genomes]
rs4768889	0.92[EUR][1000 genomes]
rs4768890	0.81[EUR][1000 genomes]
rs4768892	0.92[EUR][1000 genomes]
rs4768893	0.92[EUR][1000 genomes]
rs4768895	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4768899	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4768904	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4768906	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4768907	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4768911	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4768912	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4768913	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4768914	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55680342	0.90[EUR][1000 genomes]
rs55877451	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61926275	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7134976	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7138604	0.92[EUR][1000 genomes]
rs7305375	0.87[EUR][1000 genomes]
rs7307419	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7956591	0.92[EUR][1000 genomes]
rs876078	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876079	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876080	0.84[EUR][1000 genomes]
rs952318	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788159	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10783381	DIP2B	cis	Thyroid	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50994600-51018600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr12:51007000-51017600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr12:51012000-51016600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr12:51012000-51016600	Enhancers	Fetal Intestine Large	intestine
5	chr12:51012000-51017800	Enhancers	Duodenum Mucosa	Duodenum
6	chr12:51012000-51020000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:51012000-51020200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr12:51012200-51019800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr12:51012800-51018200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr12:51012800-51018400	Enhancers	Pancreas	Pancrea
11	chr12:51012800-51020200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr12:51013000-51019600	Enhancers	Fetal Thymus	thymus
13	chr12:51013000-51020000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr12:51013400-51019800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr12:51013400-51055200	Weak transcription	Aorta	Aorta
16	chr12:51013800-51016600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr12:51013800-51016800	Enhancers	Primary hematopoietic stem cells	blood
18	chr12:51014000-51016600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr12:51014000-51016600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr12:51014000-51016600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr12:51014000-51020600	Enhancers	Fetal Lung	lung
22	chr12:51014400-51016600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr12:51014400-51021400	Weak transcription	Lung	lung
24	chr12:51014400-51030400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr12:51014600-51041000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr12:51014800-51018000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr12:51014800-51018400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr12:51014800-51020800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr12:51015000-51017200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr12:51015000-51021400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr12:51015000-51027600	Weak transcription	NHDF-Ad	bronchial
32	chr12:51015200-51018000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr12:51015200-51018400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr12:51015600-51020200	Weak transcription	Placenta	Placenta
35	chr12:51015600-51021400	Weak transcription	Right Ventricle	heart
36	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
37	chr12:51015800-51017200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr12:51015800-51018000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr12:51015800-51019400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr12:51015800-51020000	Weak transcription	NHLF	lung
41	chr12:51015800-51020200	Enhancers	Brain Hippocampus Middle	brain
42	chr12:51015800-51020400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr12:51015800-51021200	Weak transcription	Gastric	stomach
44	chr12:51015800-51021200	Weak transcription	Hela-S3	cervix
45	chr12:51016000-51016800	Weak transcription	Thymus	Thymus
46	chr12:51016000-51017000	Weak transcription	Brain Angular Gyrus	brain
47	chr12:51016000-51017000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr12:51016000-51017000	Weak transcription	Rectal Smooth Muscle	rectum
49	chr12:51016000-51017000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr12:51016000-51017000	Enhancers	NHEK	skin

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