Variant report

Variant	rs10787771
Chromosome Location	chr10:119142449-119142450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119135075..119137421-chr10:119139743..119143361,4	K562	blood:

Extended variants
information (count: 96 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10082478	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1008448	0.85[JPT][hapmap]
rs10787767	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10787772	0.84[AMR][1000 genomes]
rs10886058	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10886062	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11197968	0.89[CEU][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs11197969	0.89[CEU][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs11197974	0.81[ASN][1000 genomes]
rs11197975	0.82[ASN][1000 genomes]
rs11197976	0.82[ASN][1000 genomes]
rs11197977	0.83[ASN][1000 genomes]
rs11197981	0.89[CEU][hapmap];0.84[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs11197983	0.86[AMR][1000 genomes]
rs11197985	0.86[AMR][1000 genomes]
rs12243133	0.84[ASN][1000 genomes]
rs12243925	0.81[AMR][1000 genomes]
rs12244411	0.88[CHD][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap];0.80[MKK][hapmap];0.80[YRI][hapmap]
rs12256994	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12260782	0.86[AMR][1000 genomes]
rs12265713	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12413507	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs12414644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12569963	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12571779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12572369	0.84[AMR][1000 genomes]
rs12573009	0.80[CEU][hapmap];0.89[JPT][hapmap]
rs1860407	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1935167	0.86[CEU][hapmap];0.90[JPT][hapmap]
rs1954212	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2153714	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2244249	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2255321	0.89[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2255367	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs2275670	0.82[ASN][1000 genomes]
rs2420457	0.81[ASN][1000 genomes]
rs2429505	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2490631	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2532782	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2532783	0.89[CEU][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs2532784	0.89[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap]
rs2532785	0.89[CEU][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs2532786	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2532795	0.89[CEU][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs2532796	0.89[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap]
rs2532809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2532817	0.89[JPT][hapmap]
rs2532836	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2532838	0.89[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs2532839	0.89[CEU][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap]
rs2532840	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2532841	0.85[JPT][hapmap]
rs2532842	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2532844	1.00[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap]
rs2794436	0.89[CEU][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs2803799	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2803801	0.93[JPT][hapmap]
rs2803804	0.89[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap]
rs2803807	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2803810	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs2803816	0.89[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2901123	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs363227	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363229	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363235	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs363236	0.89[CEU][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs363238	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363242	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs363243	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs363271	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363272	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363275	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs363276	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs363278	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs363282	0.89[CEU][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs363303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3814229	0.81[ASN][1000 genomes]
rs3814230	0.89[CEU][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs4751623	0.88[CEU][hapmap];0.88[JPT][hapmap]
rs4752048	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4752051	0.94[JPT][hapmap]
rs4752052	0.81[GIH][hapmap]
rs4752055	0.84[AMR][1000 genomes]
rs4752056	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6585431	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs7070594	0.89[CEU][hapmap];0.82[ASN][1000 genomes]
rs7072027	0.89[CEU][hapmap];0.90[JPT][hapmap]
rs7086651	0.89[CEU][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs72825515	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72825561	0.86[AMR][1000 genomes]
rs7897828	0.89[CEU][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs7898092	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7902237	0.85[JPT][hapmap]
rs887341	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs979992	0.89[CEU][hapmap];0.90[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10787771	NRAP	cis	parietal	SCAN
rs10787771	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119142000-119143000	Enhancers	Liver	Liver
2	chr10:119142000-119143000	Enhancers	HepG2	liver
3	chr10:119142000-119143000	Enhancers	K562	blood
4	chr10:119142000-119143400	Enhancers	Fetal Intestine Small	intestine
5	chr10:119142000-119143600	Enhancers	Fetal Intestine Large	intestine
6	chr10:119142200-119143200	Enhancers	Primary neutrophils fromperipheralblood	blood

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