Variant report

Variant	rs10787772
Chromosome Location	chr10:119151742-119151743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119150900..119153984-chr10:119161520..119164419,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10082463	0.85[EUR][1000 genomes]
rs10082507	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10787768	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10787769	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10787771	0.84[AMR][1000 genomes]
rs10886069	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11197938	0.84[EUR][1000 genomes]
rs11197945	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11197957	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11197961	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11197983	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11197985	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12221325	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12243925	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12249877	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12250377	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12260782	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12572369	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12573252	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1860407	0.86[AMR][1000 genomes]
rs2153714	0.86[AMR][1000 genomes]
rs2283142	0.91[EUR][1000 genomes]
rs363256	0.83[EUR][1000 genomes]
rs363262	0.89[EUR][1000 genomes]
rs363279	0.87[EUR][1000 genomes]
rs363296	0.91[EUR][1000 genomes]
rs4751621	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4751622	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4752051	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752052	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752055	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4752056	0.86[AMR][1000 genomes]
rs7090219	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72825561	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10787772	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119149400-119152600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:119150600-119151800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:119150800-119151800	Enhancers	Osteobl	bone
4	chr10:119150800-119152400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:119150800-119152400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:119150800-119152400	Enhancers	Esophagus	oesophagus
7	chr10:119150800-119152800	Enhancers	Liver	Liver
8	chr10:119151000-119151800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:119151000-119151800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:119151000-119151800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:119151000-119151800	Enhancers	Adipose Nuclei	Adipose
12	chr10:119151000-119152800	Enhancers	HepG2	liver
13	chr10:119151200-119151800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:119151200-119152200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr10:119151400-119151800	Enhancers	Fetal Muscle Trunk	muscle
16	chr10:119151400-119152000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:119151400-119152400	Enhancers	Lung	lung
18	chr10:119151400-119152600	Weak transcription	HSMMtube	muscle
19	chr10:119151600-119158800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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