Variant report

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10736682	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1893675	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs599947	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7928905	0.83[EUR][1000 genomes]
rs948844	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs948847	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9943582	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3373066	chr11:57007276-57011574	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57005200-57016400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:57007200-57011400	Enhancers	Fetal Muscle Leg	muscle
3	chr11:57007600-57010800	Enhancers	Fetal Muscle Trunk	muscle
4	chr11:57007600-57011200	Enhancers	Placenta	Placenta
5	chr11:57008200-57010600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr11:57008400-57011600	Enhancers	Spleen	Spleen
7	chr11:57008800-57016200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:57009000-57010800	Enhancers	Right Ventricle	heart
9	chr11:57009600-57012800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:57009600-57016600	Weak transcription	Liver	Liver
11	chr11:57009800-57010600	Flanking Active TSS	K562	blood
12	chr11:57009800-57016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:57010000-57012200	Weak transcription	Adipose Nuclei	Adipose
14	chr11:57010000-57012200	Weak transcription	Left Ventricle	heart
15	chr11:57010000-57012800	Weak transcription	Gastric	stomach
16	chr11:57010000-57016400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:57010200-57012200	Weak transcription	Right Atrium	heart
18	chr11:57010400-57011000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:57010400-57012200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:57010400-57012200	Weak transcription	Lung	lung

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