Variant report

Variant	rs10793028
Chromosome Location	chr11:72092646-72092647
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:72092609-72092832	MCF-7	breast:	n/a	n/a
2	POLR2A	chr11:72091889-72092648	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:72091543..72093967-chr11:72145202..72146905,2	MCF-7	breast:
2	chr11:72091482..72095787-chr11:72096179..72098134,4	K562	blood:
3	chr11:72087985..72090397-chr11:72092015..72093828,2	MCF-7	breast:
4	chr11:72091599..72093441-chr11:72109431..72111887,2	MCF-7	breast:

Variant related genes	Relation type
CLPB	TF binding region
ENSG00000162129	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3741163	0.96[CEU][hapmap];0.84[GIH][hapmap];0.93[MKK][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10793028	NEU3	cis	cerebellum	SCAN

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72045800-72094600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr11:72065000-72110800	Weak transcription	Hela-S3	cervix
3	chr11:72066600-72095000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:72069400-72111400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr11:72069600-72094600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr11:72069800-72098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:72070600-72094000	Weak transcription	Fetal Thymus	thymus
8	chr11:72072800-72098800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:72073400-72103200	Weak transcription	K562	blood
10	chr11:72075000-72099400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:72078000-72094800	Weak transcription	Liver	Liver
12	chr11:72078600-72093000	Weak transcription	Fetal Intestine Small	intestine
13	chr11:72079600-72094200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:72079600-72094800	Weak transcription	A549	lung
15	chr11:72080200-72093400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:72081200-72093200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:72084200-72096200	Weak transcription	Small Intestine	intestine
18	chr11:72084400-72093400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:72084600-72095000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:72087200-72093200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:72088400-72095600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:72089400-72093200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr11:72089800-72092800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr11:72090200-72095000	Weak transcription	Esophagus	oesophagus
25	chr11:72090200-72098800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:72090200-72103200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:72090400-72098800	Weak transcription	NHLF	lung
28	chr11:72090400-72123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:72090600-72096400	Weak transcription	Adipose Nuclei	Adipose
30	chr11:72090600-72098800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr11:72090800-72092800	Enhancers	Stomach Smooth Muscle	stomach
32	chr11:72090800-72093000	Weak transcription	Psoas Muscle	Psoas
33	chr11:72090800-72093400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:72090800-72093400	Weak transcription	Fetal Stomach	stomach
35	chr11:72090800-72093600	Weak transcription	Right Ventricle	heart
36	chr11:72090800-72098800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:72090800-72105400	Weak transcription	Left Ventricle	heart
38	chr11:72091000-72093000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:72091000-72093200	Weak transcription	Primary B cells from cord blood	blood
40	chr11:72091000-72093400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:72091000-72094800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:72091000-72094800	Weak transcription	Dnd41	blood
43	chr11:72091200-72093400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr11:72091200-72093400	Weak transcription	Fetal Brain Male	brain
45	chr11:72091200-72094400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr11:72091200-72094600	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr11:72091400-72093400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr11:72091400-72093600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:72091400-72095000	Weak transcription	HSMMtube	muscle
50	chr11:72091400-72098600	Weak transcription	NHEK	skin

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