Variant report

Variant	rs10793618
Chromosome Location	chr10:45988821-45988822
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45983824..45985525-chr10:45988162..45991006,2	K562	blood:
2	chr10:45987387..45989057-chr10:46166573..46168355,2	K562	blood:
3	chr10:45983415..45984921-chr10:45987489..45990303,2	K562	blood:

Variant related genes	Relation type
ENSG00000172671	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10793621	0.81[CEU][hapmap];0.86[CHB][hapmap];0.97[CHD][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1080264	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10900226	0.89[GIH][hapmap]
rs10900227	0.90[CEU][hapmap];0.95[GIH][hapmap]
rs11239558	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11239559	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11239564	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11239565	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11239567	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11239570	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11239577	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11239585	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11239587	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11528544	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12217545	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12766066	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1565096	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1565097	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1982794	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1982795	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1994426	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3740107	0.94[EUR][1000 genomes]
rs3824617	0.81[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4948673	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4949003	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7074524	0.84[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7095806	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73289207	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7896175	0.89[GIH][hapmap]
rs7900810	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7900977	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7918454	0.90[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.81[JPT][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs10793618	ZFAND4	cis	Nerve Tibial	GTEx
rs10793618	AGAP4	cis	Artery Tibial	GTEx
rs10793618	AGAP4	cis	Skin Sun Exposed Lower leg	GTEx
rs10793618	ANUBL1	cis	parietal	SCAN
rs10793618	MARCH8	cis	cerebellum	SCAN
rs10793618	RBP3	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45974800-45990600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr10:45978600-46000800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:45984000-45989000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:45984000-45989800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:45984000-45991400	Weak transcription	Fetal Lung	lung
6	chr10:45984200-45989400	Weak transcription	Liver	Liver
7	chr10:45984200-45990400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:45984200-45991400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:45984200-46011000	Weak transcription	Left Ventricle	heart
10	chr10:45984600-45989800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr10:45984600-45990800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:45984800-45990600	Weak transcription	Primary T cells from cord blood	blood
13	chr10:45984800-45991600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr10:45984800-45993400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:45988200-45989200	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:45988400-45996000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:45988600-45989400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr10:45988800-45989000	Enhancers	Right Atrium	heart
19	chr10:45988800-45989200	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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