Variant report
| Variant | rs10797089 |
|---|---|
| Chromosome Location | chr1:160898516-160898517 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
| No data |
| No data |
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| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000198358 | TF binding region |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10908813 | 0.86[EUR][1000 genomes] |
| rs11587040 | 0.85[EUR][1000 genomes] |
| rs12080285 | 0.82[EUR][1000 genomes] |
| rs12125065 | 0.84[EUR][1000 genomes] |
| rs12740520 | 0.85[EUR][1000 genomes] |
| rs1855186 | 0.85[EUR][1000 genomes] |
| rs1930598 | 0.85[EUR][1000 genomes] |
| rs2184064 | 0.85[EUR][1000 genomes] |
| rs34295669 | 0.85[EUR][1000 genomes] |
| rs3953093 | 0.84[EUR][1000 genomes] |
| rs3953095 | 0.84[EUR][1000 genomes] |
| rs4017453 | 0.85[EUR][1000 genomes] |
| rs4129196 | 0.83[EUR][1000 genomes] |
| rs4656277 | 0.84[EUR][1000 genomes] |
| rs4656282 | 0.80[EUR][1000 genomes] |
| rs4656964 | 0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530077 | chr1:160836448-161284904 | Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 119 gene(s) | inside rSNPs | diseases |
| 2 | esv3430322 | chr1:160851829-160920480 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv947200 | chr1:160870136-160905390 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10797089 | RP11-312J18.6 | cis | Thyroid | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
