Variant report

Variant	rs10797720
Chromosome Location	chr1:172002979-172002980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:171999936..172003512-chr1:172007617..172010205,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10157345	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10218612	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10218805	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10489730	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10797716	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10797719	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10797725	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10797734	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10797735	0.81[ASN][1000 genomes]
rs10910939	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10910966	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10910968	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10910969	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10910970	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11581104	0.80[AFR][1000 genomes]
rs12027295	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12028055	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12037820	0.82[ASN][1000 genomes]
rs12037831	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12038713	0.81[ASN][1000 genomes]
rs12128720	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1555382	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555383	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038481	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2057302	0.99[ASN][1000 genomes]
rs2057303	0.99[ASN][1000 genomes]
rs2208367	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295610	0.81[ASN][1000 genomes]
rs2295611	0.99[ASN][1000 genomes]
rs36178280	0.95[ASN][1000 genomes]
rs36180993	0.98[ASN][1000 genomes]
rs3736791	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4076678	0.98[ASN][1000 genomes]
rs4333881	0.98[ASN][1000 genomes]
rs4489594	0.87[ASN][1000 genomes]
rs4916241	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916413	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6425599	0.99[ASN][1000 genomes]
rs6425600	0.94[ASN][1000 genomes]
rs6669406	0.99[ASN][1000 genomes]
rs6683503	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6700538	0.99[ASN][1000 genomes]
rs7518865	0.99[ASN][1000 genomes]
rs7519236	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520595	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7530970	0.99[ASN][1000 genomes]
rs7533694	0.99[ASN][1000 genomes]
rs9286842	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	nsv3532	chr1:171997451-172042351	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171994000-172020400	Weak transcription	Left Ventricle	heart
2	chr1:171994200-172009000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:171999000-172006800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr1:171999600-172006800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:172000000-172012800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:172000400-172006800	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:172000400-172009800	Weak transcription	Brain Angular Gyrus	brain
8	chr1:172000600-172007000	Weak transcription	Psoas Muscle	Psoas
9	chr1:172000600-172013600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:172000800-172011400	Weak transcription	Right Ventricle	heart
11	chr1:172000800-172013800	Weak transcription	Fetal Brain Female	brain
12	chr1:172001000-172006800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:172001400-172019000	Weak transcription	Fetal Brain Male	brain
14	chr1:172001600-172003000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:172001600-172006800	Weak transcription	Brain Substantia Nigra	brain
16	chr1:172002200-172003200	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr1:172002200-172003200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:172002200-172011600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr1:172002800-172003200	Strong transcription	Brain Anterior Caudate	brain
20	chr1:172002800-172013200	Weak transcription	Primary T cells from cord blood	blood

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