The 2.0 version of rSNPBase

Variant report

Variant rs10798242
Chromosome Location chr1:172900586-172900587
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:35 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172895800-172901600 Weak transcription K562 blood
2 chr1:172895800-172902200 Weak transcription Stomach Mucosa stomach
3 chr1:172897400-172903000 Weak transcription Esophagus oesophagus
4 chr1:172897600-172902200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr1:172897600-172903000 Weak transcription Stomach Smooth Muscle stomach
6 chr1:172897800-172903000 Weak transcription Fetal Stomach stomach
7 chr1:172898200-172901800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr1:172898400-172903400 Weak transcription Rectal Smooth Muscle rectum
9 chr1:172898600-172900800 Weak transcription HSMM muscle
10 chr1:172898600-172901600 Weak transcription Hela-S3 cervix
11 chr1:172898600-172902200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr1:172899000-172901800 Weak transcription Placenta Placenta
13 chr1:172899200-172900600 Weak transcription HUVEC blood vessel
14 chr1:172899200-172900800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr1:172899200-172902000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr1:172899200-172902200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr1:172899200-172903200 Weak transcription NH-A brain
18 chr1:172899400-172901400 Weak transcription A549 lung
19 chr1:172899600-172900800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:172899600-172900800 Weak transcription Placenta Amnion Placenta Amnion
21 chr1:172899600-172900800 Weak transcription NHLF lung
22 chr1:172899600-172901400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr1:172899600-172901400 Weak transcription NHDF-Ad bronchial
24 chr1:172899600-172901800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr1:172899600-172901800 Weak transcription HMEC breast
26 chr1:172899600-172901800 Weak transcription Osteobl bone
27 chr1:172899600-172903200 Weak transcription Colon Smooth Muscle Colon
28 chr1:172899600-172903200 Weak transcription HSMMtube muscle
29 chr1:172899800-172900800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr1:172899800-172901200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:172899800-172901600 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr1:172899800-172901800 Weak transcription NHEK skin
33 chr1:172900000-172900800 Weak transcription Muscle Satellite Cultured Cells --
34 chr1:172900200-172901400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr1:172900400-172903000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015