Variant report

Variant	rs10798270
Chromosome Location	chr1:173315887-173315888
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1418193	1.00[EUR][1000 genomes]
rs16845740	1.00[EUR][1000 genomes]
rs1832847	1.00[EUR][1000 genomes]
rs2422342	1.00[EUR][1000 genomes]
rs2422428	1.00[EUR][1000 genomes]
rs4916329	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6669012	1.00[EUR][1000 genomes]
rs6671598	1.00[EUR][1000 genomes]
rs6678135	1.00[EUR][1000 genomes]
rs6689832	1.00[EUR][1000 genomes]
rs6696532	1.00[EUR][1000 genomes]
rs6700353	1.00[EUR][1000 genomes]
rs73039105	1.00[EUR][1000 genomes]
rs73039113	1.00[EUR][1000 genomes]
rs73039196	1.00[EUR][1000 genomes]
rs73041112	1.00[EUR][1000 genomes]
rs73041128	1.00[EUR][1000 genomes]
rs7544153	1.00[EUR][1000 genomes]
rs947503	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv523009	chr1:173305632-173324296	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173299200-173316600	Weak transcription	Brain Angular Gyrus	brain
2	chr1:173299800-173316600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:173300600-173329200	Weak transcription	Primary T cells from cord blood	blood
4	chr1:173301400-173321200	Weak transcription	Ovary	ovary
5	chr1:173309200-173324600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:173311800-173334000	Weak transcription	HSMMtube	muscle
7	chr1:173315200-173333000	Weak transcription	Left Ventricle	heart
8	chr1:173315400-173318000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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