Variant report

Variant	rs10801157
Chromosome Location	chr1:192790003-192790004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:192777055..192778933-chr1:192788862..192790896,2	K562	blood:
2	chr1:192784259..192787215-chr1:192787504..192790743,5	K562	blood:

Variant related genes	Relation type
ENSG00000116741	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10737618	0.85[ASN][1000 genomes]
rs10754031	0.85[ASN][1000 genomes]
rs10801151	0.85[EUR][1000 genomes]
rs10801152	0.84[EUR][1000 genomes]
rs10801153	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10801154	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10801156	0.90[EUR][1000 genomes]
rs10801158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10921265	0.85[ASN][1000 genomes]
rs10921267	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10921268	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11586572	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12565835	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1418718	0.84[EUR][1000 genomes]
rs16834851	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1819741	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2746071	0.85[EUR][1000 genomes]
rs2746072	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2746073	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3856223	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6428136	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6669632	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6684156	0.84[EUR][1000 genomes]
rs7525778	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7546861	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7549721	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192779400-192790800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:192779600-192793200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:192781000-192795000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:192781200-192791200	Weak transcription	Fetal Brain Male	brain
5	chr1:192781400-192803400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:192781800-192795200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:192782000-192794400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:192784600-192790800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:192786400-192791000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:192787000-192790600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr1:192787200-192790600	Weak transcription	Primary monocytes fromperipheralblood	blood

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