Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10733081	0.98[ASN][1000 genomes]
rs10921484	0.89[EUR][1000 genomes]
rs10921488	0.95[EUR][1000 genomes]
rs10921489	0.84[EUR][1000 genomes]
rs10921492	0.86[EUR][1000 genomes]
rs10921493	0.96[ASN][1000 genomes]
rs10921494	0.96[ASN][1000 genomes]
rs12028846	0.91[EUR][1000 genomes]
rs12073039	0.98[EUR][1000 genomes]
rs12750617	0.90[EUR][1000 genomes]
rs12755187	0.84[EUR][1000 genomes]
rs1323088	0.86[EUR][1000 genomes]
rs1323089	0.86[EUR][1000 genomes]
rs13374626	0.86[EUR][1000 genomes]
rs1442421	0.89[ASN][1000 genomes]
rs1442422	0.85[EUR][1000 genomes]
rs1830680	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2197134	0.86[AMR][1000 genomes]
rs4657898	0.90[EUR][1000 genomes]
rs4657899	0.91[EUR][1000 genomes]
rs4657901	0.87[EUR][1000 genomes]
rs488612	0.85[CEU][hapmap]
rs597957	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6672135	0.96[ASN][1000 genomes]
rs677459	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7521863	0.89[EUR][1000 genomes]
rs9943099	0.99[ASN][1000 genomes]
rs9943286	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194007800-194010200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr1:194007800-194010600	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr1:194008000-194009400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr1:194008000-194010200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr1:194008200-194010200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:194008200-194010200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr1:194008200-194010600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:194008400-194010000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr1:194008600-194009000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:194008600-194009400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr1:194008600-194009400	Enhancers	NHEK	skin
12	chr1:194008800-194009200	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr1:194008800-194009200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr1:194008800-194009200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr1:194008800-194009200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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