Variant report

Variant	rs10801463
Chromosome Location	chr1:195813633-195813634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10754158	0.80[AMR][1000 genomes]
rs10754159	0.80[AMR][1000 genomes]
rs10801461	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10801464	0.82[EUR][1000 genomes]
rs10801465	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10801466	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10801469	0.80[AMR][1000 genomes]
rs10801471	0.80[AMR][1000 genomes]
rs10801472	0.80[EUR][1000 genomes]
rs10921941	0.80[EUR][1000 genomes]
rs10921942	0.80[EUR][1000 genomes]
rs10921948	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10921949	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10921950	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10921951	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10921952	0.80[EUR][1000 genomes]
rs10921957	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12034298	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12040330	0.81[EUR][1000 genomes]
rs12058921	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12738902	0.83[EUR][1000 genomes]
rs34327705	0.84[EUR][1000 genomes]
rs4266862	0.80[EUR][1000 genomes]
rs4269755	0.81[EUR][1000 genomes]
rs4294395	0.80[EUR][1000 genomes]
rs4394633	0.80[EUR][1000 genomes]
rs4424491	0.80[EUR][1000 genomes]
rs4443868	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4478792	0.85[EUR][1000 genomes]
rs4488010	0.80[EUR][1000 genomes]
rs4539117	0.80[EUR][1000 genomes]
rs4607868	0.81[EUR][1000 genomes]
rs4631670	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6681536	0.80[EUR][1000 genomes]
rs6691116	0.80[EUR][1000 genomes]
rs6691119	0.81[EUR][1000 genomes]
rs6699302	0.80[EUR][1000 genomes]
rs6702353	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7541902	0.81[EUR][1000 genomes]
rs7542096	0.80[AMR][1000 genomes]
rs7542104	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872941	chr1:195770204-195820337	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1014402	chr1:195792089-195877256	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1815602	chr1:195796224-195830040	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2762212	chr1:195797081-195820890	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2757765	chr1:195803764-196119454	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv2758989	chr1:195803764-196119454	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv470768	chr1:195804144-195872295	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv8646	chr1:195807375-195816521	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv872942	chr1:195811203-195844389	Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv872943	chr1:195811203-195849028	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195812400-195814000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:195813200-195814000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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