Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10190872	0.81[TSI][hapmap]
rs10193937	0.82[ASN][1000 genomes]
rs10928763	1.00[MEX][hapmap]
rs11899533	1.00[MEX][hapmap]
rs1473623	0.89[ASN][1000 genomes]
rs1878843	1.00[MEX][hapmap]
rs2069906	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2069923	0.94[EUR][1000 genomes]
rs2078028	0.81[GIH][hapmap];0.81[TSI][hapmap]
rs2176595	0.81[GIH][hapmap];0.81[TSI][hapmap]
rs334139	0.81[GIH][hapmap];0.92[TSI][hapmap]
rs334140	0.81[GIH][hapmap];0.81[TSI][hapmap]
rs334149	0.81[GIH][hapmap];0.81[TSI][hapmap]
rs334150	0.80[GIH][hapmap];0.81[TSI][hapmap]
rs61131370	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6716856	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731270	0.81[GIH][hapmap];0.81[TSI][hapmap]
rs6734816	0.81[TSI][hapmap]
rs6745666	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6748999	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs6755028	0.82[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs777559	0.81[GIH][hapmap];0.81[TSI][hapmap]
rs777565	1.00[MEX][hapmap]
rs777566	1.00[MEX][hapmap]
rs777567	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8179521	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875014	chr2:128178415-128328375	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv519035	chr2:128195244-128210400	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv524607	chr2:128196424-128218364	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10803586	MAP3K2	cis	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128181400-128209800	Weak transcription	Right Atrium	heart
2	chr2:128196200-128211600	Weak transcription	Colonic Mucosa	Colon
3	chr2:128198400-128202400	Weak transcription	Liver	Liver

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